LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-526K17.2
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000458461
Biotype: antisense
Gene id: ENSG00000228539
Gene Name: RP11-526K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
390-408
0.062
2
RP4-798A10.4
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452795
Biotype: lincRNA
Gene id: ENSG00000224174
Gene Name: RP4-798A10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.062
1
XLOC_007051
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014969
Biotype: transcript isomorph
Gene id: XLOC_007051
Gene Name: XLOC_007051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
938-944
0.043
4
7mer
806-821
0.014
6
6mer
1058-1081
0.003
1
6mer
454-467
0.002
2
XLOC_012462
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025629
Biotype: transcript isomorph
Gene id: XLOC_012462
Gene Name: XLOC_012462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
543-568
0.051
1
6mer
251-270
0.005
6
6mer
815-840
0.003
0
6mer
398-416
0.003
1
CTBP1-AS2
hsa-miR-125b-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
802-818
0.028
1
7mer
1982-2005
0.025
1
6mer
1633-1645
0.008
1
RP11-384O8.1
hsa-miR-125b-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587099
Biotype: lincRNA
Gene id: ENSG00000267034
Gene Name: RP11-384O8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
928-954
0.061
7
SRRM2-AS1
hsa-miR-125b-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000382313
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1787-1808
0.027
2
6mer
16-32
0.006
1
7mer
488-510
0.004
1
7mer
1716-1743
0.004
1
8mer+mismatch
3298-3317
0.003
0
6mer
2951-2971
0.003
1
6mer
3394-3416
0.003
1
6mer
3220-3235
0.002
0
7mer
2668-2691
0.002
1
6mer
3200-3225
0.002
1
6mer
2694-2716
0.002
1
8mer
1625-1646
0.001
0
7mer
1474-1495
0.001
1
7mer
2029-2052
0.001
0
RP11-175O19.4
hsa-miR-125b-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2358-2374
0.043
8
7mer
2674-2696
0.010
5
6mer
942-960
0.007
8
6mer
742-761
0.002
2
LCMT1-AS2
hsa-miR-125b-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-29
0.041
1
8mer
558-564
0.020
0
CELF2-AS1
hsa-miR-125b-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000379256
Biotype: antisense
Gene id: ENSG00000181800
Gene Name: CELF2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.034
1
7mer
24-41
0.024
0
6mer
1543-1563
0.002
1
TTTY10
hsa-miR-125b-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-32
0.060
0
RP1-67A8.3
hsa-miR-125b-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441532
Biotype: antisense
Gene id: ENSG00000234206
Gene Name: RP1-67A8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
282-296
0.060
2
MIR6818
hsa-miR-125b-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24970-24992
0.009
2
8mer
23480-23504
0.005
0
7mer
48365-48386
0.004
1
7mer
36219-36245
0.003
0
6mer
24027-24048
0.002
7
7mer
43306-43323
0.002
0
7mer
47708-47729
0.002
3
7mer
14811-14828
0.002
0
6mer
32205-32219
0.002
2
6mer
26867-26884
0.002
1
7mer
42836-42862
0.002
0
6mer
46134-46152
0.002
3
7mer
39114-39138
0.002
5
6mer
41083-41087
0.002
5
6mer
21564-21587
0.002
1
6mer
48446-48460
0.002
1
6mer
4077-4101
0.002
0
7mer
44131-44148
0.001
3
6mer
8298-8318
0.001
1
6mer
10921-10925
0.001
0
6mer
5855-5882
0.001
4
6mer
14584-14609
0.001
1
6mer
5169-5188
0.001
1
6mer
19924-19949
0.001
3
6mer
11722-11744
0.001
1
6mer
34967-34982
0.001
1
6mer
39101-39120
0.001
9
6mer
14569-14595
0.000
0
CTD-2034I21.2
hsa-miR-125b-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576842
Biotype: lincRNA
Gene id: ENSG00000263082
Gene Name: CTD-2034I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
740-760
0.047
1
7mer
617-643
0.012
1
RP11-38C18.3
hsa-miR-125b-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441773
Biotype: antisense
Gene id: ENSG00000238022
Gene Name: RP11-38C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-630
0.059
5
LINC01311
hsa-miR-125b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565162
Biotype: antisense
Gene id: ENSG00000260924
Gene Name: LINC01311
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1108-1130
0.041
1
6mer
1376-1394
0.006
2
6mer
69-93
0.004
1
6mer
1065-1090
0.003
5
6mer
834-860
0.002
1
6mer
1064-1084
0.002
1
6mer
648-672
0.001
Not Conserved
GNAS-AS1
hsa-miR-125b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443966
Biotype: antisense
Gene id: ENSG00000235590
Gene Name: GNAS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-573
0.059
4
XLOC_001621
hsa-miR-125b-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-590
0.058
1
RP11-680F8.1
hsa-miR-125b-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1821
0.031
3
8mer
1162-1188
0.019
0
7mer
1640-1664
0.003
0
6mer
456-479
0.002
0
6mer
1475-1500
0.001
2
6mer
1495-1520
0.001
1
6mer
1316-1342
0.001
0
6mer
1250-1268
0.001
Not Conserved
XLOC_013851
hsa-miR-125b-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029192
Biotype: transcript isomorph
Gene id: XLOC_013851
Gene Name: XLOC_013851
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-285
0.030
0
8mer
126-141
0.028
0
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