LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
LINC00960
hsa-miR-125b-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1633-1653
0.023
0
7mer
461-478
0.023
0
7mer
157-169
0.021
0
ERC2-IT1
hsa-miR-125b-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024615.1
Biotype: sense
Gene id: NR_024615.1 (gene)
Gene Name: ERC2-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1967-1988
0.062
0
6mer
594-607
0.004
1
6mer
1481-1506
0.001
1
XLOC_006187
hsa-miR-125b-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013551
Biotype: transcript isomorph
Gene id: XLOC_006187
Gene Name: XLOC_006187
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-257
0.067
0
RP11-104J23.2
hsa-miR-125b-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617747
Biotype: lincRNA
Gene id: ENSG00000278690
Gene Name: RP11-104J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-146
0.038
1
7mer
52-77
0.028
0
FLG-AS1
hsa-miR-125b-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445097
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2097-2118
0.053
3
7mer
2415-2433
0.011
1
6mer
1969-1988
0.003
0
LINC01396
hsa-miR-125b-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609099
Biotype: lincRNA
Gene id: ENSG00000273396
Gene Name: LINC01396
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
382-408
0.065
0
CNTFR-AS1
hsa-miR-125b-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453642
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-337
0.054
2
7mer
399-423
0.005
2
6mer
545-559
0.004
2
6mer
95-121
0.003
1
RP11-438B23.2
hsa-miR-125b-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
963-973
0.053
9
7mer
3291-3303
0.007
3
6mer
2054-2078
0.002
Not Conserved
6mer
2425-2438
0.002
3
6mer
3568-3577
0.001
Not Conserved
RP11-276H7.2
hsa-miR-125b-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424774
Biotype: antisense
Gene id: ENSG00000227959
Gene Name: RP11-276H7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
127-153
0.061
2
6mer
56-81
0.004
1
CNTFR-AS1
hsa-miR-125b-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438244
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-232
0.052
2
7mer
294-318
0.005
2
6mer
440-454
0.005
2
6mer
95-121
0.003
1
XLOC_011726
hsa-miR-125b-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024417
Biotype: transcript isomorph
Gene id: XLOC_011726
Gene Name: XLOC_011726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-30
0.052
0
7mer
73-96
0.010
1
6mer
1076-1094
0.001
1
LINC00680
hsa-miR-125b-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-345
0.053
0
6mer
380-399
0.011
0
AC079466.1
hsa-miR-125b-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4366-4390
0.040
1
7mer
914-940
0.018
1
6mer
3088-3097
0.005
1
XLOC_007865
hsa-miR-125b-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016487
Biotype: transcript isomorph
Gene id: XLOC_007865
Gene Name: XLOC_007865
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-369
0.048
2
7mer
488-494
0.006
0
6mer
363-367
0.005
2
7mer
792-816
0.004
0
RP4-591N18.2
hsa-miR-125b-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417123
Biotype: antisense
Gene id: ENSG00000232564
Gene Name: RP4-591N18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1599-1621
0.037
0
8mer
1669-1688
0.023
1
6mer
575-600
0.003
1
RP11-96L14.7
hsa-miR-125b-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414762
Biotype: antisense
Gene id: ENSG00000236782
Gene Name: RP11-96L14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
326-352
0.063
5
AC004158.3
hsa-miR-125b-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-673
0.049
8
7mer
1407-1426
0.005
3
6mer
3939-3959
0.004
5
6mer
1179-1196
0.003
10
6mer
3234-3251
0.001
0
RP5-875O13.1
hsa-miR-125b-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415386
Biotype: lincRNA
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1299-1322
0.021
0
7mer
1180-1206
0.018
1
7mer
391-412
0.015
1
6mer
1374-1399
0.006
1
6mer
374-397
0.003
1
RP11-443N24.4
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544399
Biotype: lincRNA
Gene id: ENSG00000256256
Gene Name: RP11-443N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-239
0.035
1
7mer
24-30
0.027
3
RP1-309I22.2
hsa-miR-125b-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-613
0.015
1
8mer
11081-11106
0.011
1
8mer
2688-2706
0.008
0
8mer
1032-1057
0.005
0
6mer
28244-28271
0.003
4
6mer
14624-14644
0.002
4
6mer
19892-19909
0.002
0
6mer
5890-5908
0.002
4
6mer
16462-16466
0.002
4
7mer
4927-4949
0.001
0
7mer
4659-4676
0.001
2
6mer
17861-17873
0.001
2
6mer
10756-10767
0.001
2
7mer
12446-12470
0.001
Not Conserved
6mer
21600-21625
0.001
1
6mer
6880-6897
0.001
1
6mer
12578-12588
0.001
1
6mer
2356-2380
0.001
0
6mer
4604-4626
0.001
Not Conserved
6mer
3375-3394
0.001
1
6mer
13840-13854
0.001
0
6mer
4806-4827
0.001
0
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