LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP3-323A16.1
hsa-miR-125b-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21437-21455
0.025
2
8mer
17461-17482
0.007
1
7mer
4919-4945
0.004
0
7mer
17212-17232
0.003
2
8mer
47197-47216
0.003
0
7mer
44555-44568
0.002
4
6mer
35910-35930
0.002
2
6mer
1587-1613
0.002
3
7mer
30425-30442
0.002
1
6mer
45203-45224
0.002
2
6mer
43395-43413
0.001
Not Conserved
6mer
48382-48406
0.001
0
6mer
16112-16120
0.001
4
6mer
39868-39894
0.001
0
6mer
3372-3395
0.001
0
6mer
41994-42020
0.001
1
6mer
24123-24131
0.001
1
6mer
8791-8802
0.001
0
6mer
16823-16836
0.001
2
6mer
43101-43125
0.001
3
6mer
40678-40702
0.001
2
6mer
21186-21200
0.001
0
6mer
39239-39258
0.001
1
6mer
47475-47489
0.001
0
7mer
52018-52038
0.001
Not Conserved
6mer
11321-11343
0.001
0
6mer
51997-52013
0.001
1
6mer
36046-36067
0.001
1
6mer
52121-52142
0.001
1
6mer
44263-44279
0.001
3
6mer
47575-47583
0.001
1
6mer
40953-40971
0.001
0
6mer
1747-1774
0.000
Not Conserved
6mer
40820-40834
0.000
1
RP11-20L19.1
hsa-miR-125b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549669
Biotype: lincRNA
Gene id: ENSG00000257787
Gene Name: RP11-20L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-215
0.075
1
XLOC_013773
hsa-miR-125b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028422
Biotype: transcript isomorph
Gene id: XLOC_013773
Gene Name: XLOC_013773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.011
1
7mer
477-502
0.010
1
8mer
2689-2710
0.006
0
8mer
5103-5124
0.006
Not Conserved
7mer
5733-5747
0.004
Not Conserved
6mer
5658-5677
0.003
0
6mer
269-292
0.003
0
6mer
5443-5467
0.003
Not Conserved
6mer
5296-5321
0.002
0
6mer
905-924
0.002
0
6mer
5345-5370
0.002
0
6mer
1115-1140
0.001
0
6mer
1277-1301
0.001
0
6mer
5247-5272
0.001
Not Conserved
6mer
4815-4840
0.001
0
6mer
4959-4984
0.001
Not Conserved
6mer
5198-5223
0.001
Not Conserved
6mer
4766-4791
0.001
0
6mer
3059-3084
0.001
0
6mer
4861-4886
0.001
Not Conserved
6mer
2900-2927
0.001
0
6mer
2193-2218
0.001
Not Conserved
6mer
3354-3378
0.001
0
6mer
4573-4598
0.001
Not Conserved
6mer
3757-3778
0.001
0
6mer
2034-2059
0.001
Not Conserved
6mer
4717-4742
0.001
Not Conserved
6mer
3659-3684
0.001
0
6mer
4048-4073
0.001
Not Conserved
6mer
4527-4552
0.001
Not Conserved
6mer
3855-3880
0.001
Not Conserved
6mer
4380-4405
0.001
Not Conserved
6mer
4478-4503
0.000
Not Conserved
6mer
4195-4220
0.000
Not Conserved
6mer
3610-3635
0.000
Not Conserved
6mer
3561-3586
0.000
Not Conserved
6mer
3512-3537
0.000
Not Conserved
6mer
4331-4356
0.000
Not Conserved
6mer
3999-4019
0.000
Not Conserved
6mer
3708-3733
0.000
Not Conserved
6mer
2640-2665
0.000
Not Conserved
6mer
3806-3831
0.000
Not Conserved
6mer
2585-2608
0.000
Not Conserved
6mer
4244-4264
0.000
Not Conserved
6mer
2528-2549
0.000
Not Conserved
VIM-AS1
hsa-miR-125b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437232
Biotype: antisense
Gene id: ENSG00000229124
Gene Name: VIM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1313-1338
0.074
1
RP4-671O14.7
hsa-miR-125b-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14876-14891
0.010
1
8mer
16493-16516
0.010
1
7mer
1499-1515
0.008
2
8mer
13571-13589
0.008
1
7mer
865-889
0.008
2
8mer
10532-10551
0.004
Not Conserved
6mer
18200-18214
0.003
1
6mer
14426-14449
0.002
1
6mer
8948-8970
0.001
0
6mer
13774-13787
0.001
2
6mer
3777-3799
0.001
0
6mer
17484-17505
0.001
0
6mer
8090-8110
0.001
1
6mer
13416-13429
0.001
1
6mer
16207-16225
0.001
0
6mer
9748-9771
0.001
0
6mer
11516-11535
0.001
0
6mer
7156-7174
0.001
0
6mer
16130-16138
0.001
2
6mer
2221-2248
0.001
1
6mer
9330-9350
0.001
0
6mer
8863-8885
0.001
0
6mer
15726-15743
0.001
0
6mer
13270-13289
0.001
1
6mer
6289-6309
0.001
Not Conserved
6mer
7901-7926
0.001
Not Conserved
6mer
16012-16027
0.001
0
6mer
8017-8034
0.001
0
6mer
1462-1486
0.001
1
6mer
13217-13231
0.001
1
6mer
13554-13577
0.000
2
6mer
8933-8954
0.000
0
CTD-2139B15.4
hsa-miR-125b-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505158
Biotype: lincRNA
Gene id: ENSG00000250822
Gene Name: CTD-2139B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-450
0.067
5
7mer
2153-2178
0.004
0
6mer
829-841
0.003
0
XLOC_000063
hsa-miR-125b-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000848
Biotype: transcript isomorph
Gene id: XLOC_000063
Gene Name: XLOC_000063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.064
1
6mer
303-326
0.009
1
XLOC_009832
hsa-miR-125b-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020515
Biotype: transcript isomorph
Gene id: XLOC_009832
Gene Name: XLOC_009832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
233-254
0.072
1
CNTFR-AS1
hsa-miR-125b-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436360
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-666
0.056
2
7mer
728-752
0.006
2
6mer
874-888
0.004
2
6mer
277-296
0.004
2
6mer
95-121
0.003
1
XLOC_009888
hsa-miR-125b-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020569
Biotype: transcript isomorph
Gene id: XLOC_009888
Gene Name: XLOC_009888
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
314-340
0.072
1
XLOC_013274
hsa-miR-125b-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4794-4808
0.065
1
6mer
6273-6291
0.005
0
8mer
2585-2591
0.002
Not Conserved
RP11-384P7.7
hsa-miR-125b-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3217-3235
0.029
1
8mer
598-621
0.029
1
7mer
1804-1828
0.007
1
6mer
369-373
0.007
2
AP001046.6
hsa-miR-125b-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435702
Biotype: lincRNA
Gene id: ENSG00000225637
Gene Name: AP001046.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
72-95
0.036
Not Conserved
8mer
1683-1702
0.019
1
8mer+wobble
2451-2466
0.012
1
7mer
1354-1376
0.002
0
6mer
2633-2650
0.002
0
LOC100128885
hsa-miR-125b-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
492-511
0.052
0
7mer
3444-3464
0.013
0
6mer
1015-1019
0.003
0
6mer
1817-1832
0.002
0
6mer
1899-1903
0.001
0
XLOC_008883
hsa-miR-125b-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
247-273
0.044
1
8mer
512-539
0.027
1
AE000658.22
hsa-miR-125b-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000535893
Biotype: antisense
Gene id: ENSG00000257096
Gene Name: AE000658.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-374
0.059
7
6mer
423-436
0.007
1
6mer
225-245
0.004
5
RP3-395M20.7
hsa-miR-125b-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456687
Biotype: antisense
Gene id: ENSG00000225931
Gene Name: RP3-395M20.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-60
0.030
1
8mer
1081-1098
0.015
0
6mer
1071-1090
0.011
1
7mer
383-409
0.006
0
6mer
162-184
0.005
0
6mer
378-396
0.004
0
RP11-83A24.2
hsa-miR-125b-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608661
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2078-2092
0.069
2
RP11-455F5.6
hsa-miR-125b-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000610691
Biotype: antisense
Gene id: ENSG00000275371
Gene Name: RP11-455F5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-538
0.069
4
XLOC_001194
hsa-miR-125b-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001807
Biotype: transcript isomorph
Gene id: XLOC_001194
Gene Name: XLOC_001194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-57
0.068
0
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