LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-488I20.3
hsa-miR-125b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_027080.2
Biotype: lincRNA
Gene id: NR_027080.2 (gene)
Gene Name: RP11-488I20.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
250-265
0.096
0
XLOC_007084
hsa-miR-125b-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015007
Biotype: transcript isomorph
Gene id: XLOC_007084
Gene Name: XLOC_007084
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-478
0.088
1
6mer
438-464
0.005
0
MIR4534
hsa-miR-125b-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36724-36747
0.011
Not Conserved
8mer
11267-11293
0.006
4
8mer
38797-38803
0.005
0
8mer
38277-38300
0.005
1
7mer
20534-20555
0.005
3
8mer
26977-27000
0.005
0
7mer
50311-50333
0.005
2
7mer
4349-4355
0.005
1
7mer
36318-36323
0.003
3
7mer
31800-31824
0.003
2
6mer
39358-39383
0.002
1
6mer
52833-52856
0.002
1
6mer
750-768
0.002
0
6mer
23905-23917
0.002
2
6mer
13313-13336
0.002
1
6mer
19680-19699
0.002
8
6mer
4992-5015
0.001
3
6mer
23660-23675
0.001
Not Conserved
6mer
40471-40479
0.001
1
6mer
18975-18991
0.001
1
6mer
18560-18585
0.001
1
6mer
51934-51938
0.001
1
6mer
17964-17982
0.001
3
7mer
26996-27023
0.001
Not Conserved
6mer
38526-38538
0.001
2
6mer
28065-28085
0.001
3
6mer
24974-24990
0.001
5
6mer
46819-46840
0.001
0
6mer
17541-17560
0.001
0
6mer
49678-49694
0.001
4
6mer
43408-43425
0.001
1
6mer
47753-47764
0.001
1
6mer
22187-22200
0.001
0
6mer
34274-34300
0.001
1
6mer
45832-45842
0.001
0
6mer
41781-41802
0.001
1
6mer
47921-47945
0.001
3
6mer
33834-33848
0.001
0
6mer
49813-49835
0.001
1
6mer
33168-33189
0.001
3
6mer
24276-24297
0.001
2
6mer
24505-24522
0.001
0
6mer
20296-20307
0.001
0
6mer
45859-45881
0.000
1
6mer
35944-35966
0.000
1
6mer
20310-20334
0.000
0
6mer
24348-24365
0.000
2
6mer
47934-47953
0.000
1
RP11-111F5.4
hsa-miR-125b-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
669-691
0.057
0
7mer
547-572
0.034
0
RP11-83A24.2
hsa-miR-125b-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609359
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-195
0.089
2
XLOC_011811
hsa-miR-125b-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024491
Biotype: transcript isomorph
Gene id: XLOC_011811
Gene Name: XLOC_011811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-234
0.085
1
6mer
154-178
0.004
0
XLOC_007089
hsa-miR-125b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-720
0.029
0
8mer
381-396
0.019
Not Conserved
6mer
956-981
0.008
1
6mer
2830-2850
0.004
1
6mer
8185-8203
0.003
1
6mer
10974-10991
0.003
0
6mer
8039-8064
0.003
1
6mer
1112-1121
0.003
0
6mer
1503-1508
0.003
0
8mer
6444-6456
0.003
Not Conserved
6mer
9898-9916
0.002
0
7mer
6229-6250
0.002
Not Conserved
6mer
9217-9236
0.001
Not Conserved
6mer
6751-6777
0.001
Not Conserved
6mer
8844-8862
0.001
0
6mer
354-379
0.001
Not Conserved
6mer
5203-5219
0.001
Not Conserved
6mer
4896-4913
0.001
Not Conserved
6mer
8130-8156
0.000
Not Conserved
RP11-83A24.2
hsa-miR-125b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608663
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
189-203
0.087
2
LL22NC03-86G7.1
hsa-miR-125b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24429-24446
0.008
2
8mer
34863-34889
0.006
1
8mer
3222-3242
0.006
2
8mer
9404-9424
0.005
1
7mer
22300-22319
0.004
0
6mer
272-291
0.004
1
8mer
3350-3374
0.003
1
7mer
2071-2087
0.003
0
8mer
25286-25308
0.002
1
6mer
110-133
0.002
4
7mer
11385-11404
0.002
0
8mer
9198-9221
0.002
0
6mer
31062-31078
0.002
2
7mer
22844-22849
0.002
4
6mer
30242-30260
0.002
2
6mer
20012-20030
0.002
1
6mer
20630-20653
0.001
5
6mer
35071-35088
0.001
1
6mer
25536-25548
0.001
6
6mer
14915-14940
0.001
1
6mer
7711-7729
0.001
0
6mer
4549-4564
0.001
1
6mer
21965-21988
0.001
2
6mer
22730-22746
0.001
1
6mer
29206-29233
0.001
3
6mer
7984-8004
0.001
1
7mer
24960-24985
0.001
0
6mer
26955-26971
0.001
1
6mer
34325-34343
0.001
1
6mer
13368-13384
0.001
0
6mer
25269-25294
0.001
1
6mer
6776-6800
0.001
1
6mer
20162-20182
0.001
2
6mer
20481-20501
0.001
1
6mer
1608-1626
0.001
1
6mer
9775-9801
0.001
1
6mer
31330-31345
0.001
2
6mer
6618-6632
0.001
2
6mer
6342-6362
0.001
0
6mer
2782-2805
0.001
1
6mer
10013-10032
0.001
1
6mer
12375-12391
0.001
1
6mer
2302-2320
0.001
0
6mer
18166-18181
0.001
1
6mer
16972-16981
0.001
0
6mer
11856-11873
0.001
Not Conserved
6mer
16784-16803
0.001
0
6mer
12547-12573
0.001
0
6mer
30276-30298
0.001
2
6mer
2868-2886
0.001
6
6mer
6409-6434
0.001
4
6mer
31586-31610
0.000
Not Conserved
6mer
17184-17198
0.000
1
6mer
34402-34424
0.000
1
6mer
17094-17115
0.000
0
6mer
17059-17069
0.000
0
PCAT19
hsa-miR-125b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1854-1860
0.055
1
8mer
376-385
0.029
0
6mer
2319-2336
0.003
0
RP11-46H11.3
hsa-miR-125b-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-349
0.055
0
7mer
2646-2666
0.029
0
FAM27B
hsa-miR-125b-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027422.1
Biotype: lincRNA
Gene id: NR_027422.1 (gene)
Gene Name: FAM27B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-334
0.052
0
7mer
387-397
0.030
0
RP11-449O16.2
hsa-miR-125b-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438919
Biotype: sense_intronic
Gene id: ENSG00000229711
Gene Name: RP11-449O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-542
0.040
2
9mer
210-234
0.038
1
6mer
347-369
0.004
0
RP1-60O19.1
hsa-miR-125b-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418134
Biotype: retained_intron
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-481
0.077
2
6mer
30-50
0.004
Not Conserved
CTD-2503O16.4
hsa-miR-125b-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505200
Biotype: lincRNA
Gene id: ENSG00000249856
Gene Name: CTD-2503O16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
771-793
0.080
1
LINC01511
hsa-miR-125b-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503067
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
608-628
0.079
1
LINC00663
hsa-miR-125b-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1565-1572
0.059
1
7mer
2094-2116
0.010
0
6mer
2283-2307
0.006
1
6mer
2478-2498
0.003
0
CTA-796E4.5
hsa-miR-125b-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24248-24254
0.020
1
8mer
28570-28582
0.006
0
7mer
6203-6217
0.005
1
6mer
31528-31555
0.004
2
7mer
9991-10008
0.004
0
6mer
604-625
0.003
1
7mer
2349-2363
0.002
1
7mer
6857-6877
0.002
1
6mer
17808-17823
0.002
3
6mer
25248-25273
0.002
1
7mer
12371-12391
0.002
0
6mer
25787-25805
0.002
2
6mer
27533-27557
0.002
1
6mer
26637-26661
0.002
1
6mer
6717-6736
0.002
1
6mer
28272-28296
0.002
0
6mer
7371-7395
0.001
1
6mer
15208-15235
0.001
2
6mer
8230-8249
0.001
0
6mer
19005-19025
0.001
1
6mer
23314-23318
0.001
0
6mer
19383-19394
0.001
0
6mer
14240-14252
0.001
1
6mer
10476-10492
0.001
1
6mer
12078-12098
0.001
0
6mer
3980-4000
0.001
2
6mer
18230-18250
0.001
1
6mer
28898-28921
0.001
1
6mer
29013-29032
0.001
1
6mer
7427-7450
0.001
0
6mer
5430-5453
0.001
0
6mer
12525-12549
0.000
0
6mer
28339-28362
0.000
Not Conserved
6mer
3991-4007
0.000
1
SPTY2D1-AS1
hsa-miR-125b-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542172
Biotype: retained_intron
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-64
0.076
4
RP11-382E9.1
hsa-miR-125b-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452199
Biotype: lincRNA
Gene id: ENSG00000231718
Gene Name: RP11-382E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1888-1905
0.053
2
8mer
159-173
0.020
1
6mer
1014-1039
0.003
1
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