LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000741
hsa-miR-125b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001425
Biotype: transcript isomorph
Gene id: XLOC_000741
Gene Name: XLOC_000741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1229-1247
0.044
1
XLOC_007254
hsa-miR-125b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015544
Biotype: transcript isomorph
Gene id: XLOC_007254
Gene Name: XLOC_007254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-37
0.044
1
XLOC_013012
hsa-miR-125b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-243
0.033
1
6mer
920-938
0.012
1
LINC01447
hsa-miR-125b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429010
Biotype: lincRNA
Gene id: ENSG00000236078
Gene Name: LINC01447
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2047-2063
0.021
0
8mer
1847-1853
0.019
0
6mer
458-473
0.003
1
6mer
1440-1461
0.002
0
LINC00843
hsa-miR-125b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444438
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-393
0.044
1
RP11-672L10.6
hsa-miR-125b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000610185
Biotype: lincRNA
Gene id: ENSG00000273355
Gene Name: RP11-672L10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-425
0.044
1
XLOC_011918
hsa-miR-125b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3568-3589
0.032
0
7mer
3527-3547
0.008
0
6mer
174-190
0.003
0
6mer
1466-1486
0.001
Not Conserved
RP11-731N10.1
hsa-miR-125b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522123
Biotype: lincRNA
Gene id: ENSG00000253836
Gene Name: RP11-731N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
265-286
0.044
0
XLOC_006281
hsa-miR-125b-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013616
Biotype: transcript isomorph
Gene id: XLOC_006281
Gene Name: XLOC_006281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-296
0.039
2
6mer
621-635
0.005
1
XLOC_008063
hsa-miR-125b-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017243
Biotype: transcript isomorph
Gene id: XLOC_008063
Gene Name: XLOC_008063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4801-4816
0.021
1
7mer
3501-3526
0.010
2
7mer
3905-3919
0.008
1
7mer
3119-3132
0.002
1
6mer
901-915
0.002
0
RP11-434I12.3
hsa-miR-125b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518355
Biotype: lincRNA
Gene id: ENSG00000253339
Gene Name: RP11-434I12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-326
0.044
7
XLOC_012373
hsa-miR-125b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026027
Biotype: transcript isomorph
Gene id: XLOC_012373
Gene Name: XLOC_012373
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.044
6
RP11-4O1.2
hsa-miR-125b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563434
Biotype: sense_overlapping
Gene id: ENSG00000259953
Gene Name: RP11-4O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4453-4474
0.023
3
7mer
261-285
0.016
0
7mer
2117-2132
0.004
3
XLOC_010582
hsa-miR-125b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021980
Biotype: transcript isomorph
Gene id: XLOC_010582
Gene Name: XLOC_010582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3970-3997
0.034
3
7mer
546-564
0.010
Not Conserved
AC004158.2
hsa-miR-125b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570152
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-326
0.035
1
6mer
184-207
0.004
1
6mer
312-335
0.004
1
RP11-290K4.1
hsa-miR-125b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491909
Biotype: lincRNA
Gene id: ENSG00000239716
Gene Name: RP11-290K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-153
0.043
1
AC005532.5
hsa-miR-125b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447039
Biotype: lincRNA
Gene id: ENSG00000230825
Gene Name: AC005532.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
236-255
0.040
1
6mer
360-377
0.003
3
XLOC_011209
hsa-miR-125b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023346
Biotype: transcript isomorph
Gene id: XLOC_011209
Gene Name: XLOC_011209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-454
0.023
5
7mer
219-235
0.014
2
6mer
50-73
0.007
3
RP5-999L4.2
hsa-miR-125b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616029
Biotype: lincRNA
Gene id: ENSG00000275142
Gene Name: RP5-999L4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-58
0.043
1
XLOC_002214
hsa-miR-125b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-372
0.019
0
6mer
1419-1436
0.011
1
6mer
1839-1857
0.006
0
6mer
1736-1755
0.005
0
8mer+wobble
847-866
0.002
Not Conserved
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