LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001338
hsa-miR-125b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003564
Biotype: transcript isomorph
Gene id: XLOC_001338
Gene Name: XLOC_001338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-282
0.046
0
RP1-74M1.3
hsa-miR-125b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610135
Biotype: lincRNA
Gene id: ENSG00000272796
Gene Name: RP1-74M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4613-4632
0.012
4
7mer
385-401
0.010
1
7mer
1155-1179
0.004
4
6mer
4013-4028
0.003
4
7mer
996-1020
0.003
Not Conserved
6mer
539-560
0.003
4
6mer
2517-2543
0.003
5
7mer
2776-2798
0.003
1
7mer
976-999
0.002
0
6mer
335-359
0.002
1
6mer
2125-2146
0.001
1
RP11-48F14.1
hsa-miR-125b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2051-2069
0.040
1
6mer
178-198
0.003
3
6mer
1195-1219
0.002
2
CTD-2006C1.2
hsa-miR-125b-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-379
0.043
1
6mer
2758-2777
0.002
0
XLOC_004517
hsa-miR-125b-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-179
0.045
1
XLOC_003440
hsa-miR-125b-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1593
0.028
1
6mer
204-224
0.007
0
6mer
2406-2430
0.004
1
6mer
898-920
0.002
0
6mer
1250-1273
0.002
1
6mer
1688-1706
0.002
1
RP11-805I24.1
hsa-miR-125b-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563931
Biotype: lincRNA
Gene id: ENSG00000261177
Gene Name: RP11-805I24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-174
0.016
2
8mer
5053-5078
0.013
0
8mer
7327-7339
0.009
1
7mer
3614-3629
0.004
1
7mer
2535-2555
0.002
0
6mer
5743-5769
0.001
4
6mer
2174-2198
0.001
Not Conserved
AC007966.1
hsa-miR-125b-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110216.1
Biotype: antisense
Gene id: NR_110216.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-801
0.045
0
AC096669.3
hsa-miR-125b-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439893
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-279
0.045
1
FAM157A
hsa-miR-125b-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
803-828
0.029
0
6mer
348-368
0.010
0
6mer
565-586
0.007
0
TTN-AS1
hsa-miR-125b-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614124
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-360
0.045
4
XLOC_002766
hsa-miR-125b-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006158
Biotype: transcript isomorph
Gene id: XLOC_002766
Gene Name: XLOC_002766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-99
0.045
1
RP5-944M2.3
hsa-miR-125b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539969
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1639-1655
0.040
1
7mer
402-422
0.003
Not Conserved
6mer
715-736
0.002
1
RP11-517C16.2
hsa-miR-125b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565700
Biotype: antisense
Gene id: ENSG00000261286
Gene Name: RP11-517C16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2940-2960
0.016
1
7mer
445-464
0.011
3
7mer
24-43
0.009
2
7mer
596-622
0.007
0
6mer
1610-1625
0.001
3
RP11-314M24.1
hsa-miR-125b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461528
Biotype: lincRNA
Gene id: ENSG00000240241
Gene Name: RP11-314M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-181
0.045
2
XLOC_013743
hsa-miR-125b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-830
0.015
9
7mer
221-231
0.014
3
8mer
896-919
0.010
2
6mer
136-158
0.005
2
6mer
1425-1444
0.001
1
RP11-165M1.3
hsa-miR-125b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569490
Biotype: antisense
Gene id: ENSG00000261394
Gene Name: RP11-165M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
242-262
0.039
2
6mer
143-154
0.003
1
6mer
99-123
0.002
1
CTB-178M22.2
hsa-miR-125b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519795
Biotype: antisense
Gene id: ENSG00000253978
Gene Name: CTB-178M22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42-62
0.044
0
XLOC_008559
hsa-miR-125b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018783
Biotype: transcript isomorph
Gene id: XLOC_008559
Gene Name: XLOC_008559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1670-1691
0.043
4
6mer
1173-1191
0.002
1
XLOC_012925
hsa-miR-125b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026823
Biotype: transcript isomorph
Gene id: XLOC_012925
Gene Name: XLOC_012925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-328
0.041
1
6mer
683-691
0.003
1
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