LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-469N6.3
hsa-miR-125b-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529417
Biotype: lincRNA
Gene id: ENSG00000254989
Gene Name: RP11-469N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
97-111
0.047
1
RP11-247A12.7
hsa-miR-125b-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000600965
Biotype: lincRNA
Gene id: ENSG00000268707
Gene Name: RP11-247A12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-291
0.047
2
RP11-1085N6.5
hsa-miR-125b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555946
Biotype: lincRNA
Gene id: ENSG00000258776
Gene Name: RP11-1085N6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-473
0.047
2
LL22NC03-2H8.4
hsa-miR-125b-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-197
0.023
0
6mer
254-280
0.013
0
6mer
106-126
0.011
0
CTD-2201I18.1
hsa-miR-125b-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514042
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2302-2324
0.045
4
6mer
1082-1102
0.002
1
6mer
1265-1289
0.001
1
XLOC_003447
hsa-miR-125b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008751
Biotype: transcript isomorph
Gene id: XLOC_003447
Gene Name: XLOC_003447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-367
0.039
1
6mer
184-188
0.008
1
RNASEH2B-AS1
hsa-miR-125b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594244
Biotype: antisense
Gene id: ENSG00000233672
Gene Name: RNASEH2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-319
0.047
0
RP11-314M24.1
hsa-miR-125b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496674
Biotype: lincRNA
Gene id: ENSG00000240241
Gene Name: RP11-314M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.047
2
HOXA-AS2
hsa-miR-125b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000523364
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
934-954
0.047
5
RP5-828H9.1
hsa-miR-125b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430097
Biotype: lincRNA
Gene id: ENSG00000230563
Gene Name: RP5-828H9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-160
0.021
3
7mer
1423-1448
0.016
1
7mer
944-963
0.003
2
6mer
174-197
0.003
1
6mer
1635-1652
0.002
1
XLOC_010128
hsa-miR-125b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020842
Biotype: transcript isomorph
Gene id: XLOC_010128
Gene Name: XLOC_010128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1826-1841
0.044
1
6mer
828-851
0.003
0
RP11-38M8.1
hsa-miR-125b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609209
Biotype: lincRNA
Gene id: ENSG00000273297
Gene Name: RP11-38M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
702-709
0.032
1
7mer
810-835
0.009
0
6mer
731-749
0.005
3
RP11-932O9.4
hsa-miR-125b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567770
Biotype: lincRNA
Gene id: ENSG00000259906
Gene Name: RP11-932O9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
972-994
0.021
1
8mer
589-596
0.020
1
6mer
270-297
0.003
0
6mer
404-422
0.002
0
LINC00843
hsa-miR-125b-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429104
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-465
0.046
1
CTD-2012K14.8
hsa-miR-125b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621378
Biotype: antisense
Gene id: ENSG00000276075
Gene Name: CTD-2012K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
59-85
0.038
3
6mer
397-411
0.006
5
6mer
707-722
0.002
0
RP11-574K11.29
hsa-miR-125b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000580623
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-115
0.046
1
RP11-473C18.3
hsa-miR-125b-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565685
Biotype: antisense
Gene id: ENSG00000261687
Gene Name: RP11-473C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-449
0.046
0
RP11-488I20.3
hsa-miR-125b-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569242
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
437-452
0.046
0
RP11-867G23.4
hsa-miR-125b-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528650
Biotype: antisense
Gene id: ENSG00000254452
Gene Name: RP11-867G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
244-267
0.038
1
6mer
319-341
0.007
5
AC007966.1
hsa-miR-125b-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110215.1
Biotype: antisense
Gene id: NR_110215.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-801
0.046
0
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