LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP1-101G11.3
hsa-miR-125b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-726
0.015
1
9mer
2635-2655
0.011
Not Conserved
9mer
5837-5863
0.009
0
7mer
5579-5596
0.004
1
6mer
318-338
0.003
0
6mer
1119-1130
0.002
0
6mer
6911-6933
0.002
0
6mer
900-917
0.001
1
6mer
4443-4470
0.001
1
6mer
9509-9529
0.001
1
RP11-732A19.9
hsa-miR-125b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545572
Biotype: antisense
Gene id: ENSG00000255680
Gene Name: RP11-732A19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-60
0.049
6
CTD-2616J11.3
hsa-miR-125b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000532473
Biotype: antisense
Gene id: ENSG00000254760
Gene Name: CTD-2616J11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-449
0.046
6
6mer
122-133
0.003
0
XLOC_008072
hsa-miR-125b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-52
0.041
1
7mer
715-727
0.005
1
6mer
253-272
0.003
0
RP11-700H6.2
hsa-miR-125b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000512717
Biotype: lincRNA
Gene id: ENSG00000251665
Gene Name: RP11-700H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-65
0.049
1
RP11-640N11.2
hsa-miR-125b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-274
0.029
5
7mer
5199-5216
0.007
0
8mer
5135-5148
0.005
0
7mer
986-1006
0.005
1
6mer
623-642
0.002
Not Conserved
6mer
5129-5148
0.001
Not Conserved
6mer
1503-1528
0.001
0
DYNLL1-AS1
hsa-miR-125b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038854.1
Biotype: antisense
Gene id: NR_038854.1 (gene)
Gene Name: DYNLL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
625-649
0.026
1
8mer
925-944
0.021
3
6mer
959-983
0.002
2
RP3-449M8.9
hsa-miR-125b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602790
Biotype: lincRNA
Gene id: ENSG00000270000
Gene Name: RP3-449M8.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-206
0.037
1
6mer
395-417
0.007
4
6mer
155-172
0.005
1
AC010096.1
hsa-miR-125b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-527
0.042
1
7mer
747-758
0.004
2
6mer
813-837
0.002
1
CTC-459F4.3
hsa-miR-125b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587188
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-611
0.048
0
XLOC_012567
hsa-miR-125b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026154
Biotype: transcript isomorph
Gene id: XLOC_012567
Gene Name: XLOC_012567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
997-1014
0.018
1
9mer
1146-1162
0.014
0
8mer
688-707
0.013
1
6mer
1244-1259
0.002
0
6mer
566-589
0.001
0
CTD-2358C21.3
hsa-miR-125b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563338
Biotype: lincRNA
Gene id: ENSG00000260568
Gene Name: CTD-2358C21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-186
0.048
0
XLOC_014110
hsa-miR-125b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029171
Biotype: transcript isomorph
Gene id: XLOC_014110
Gene Name: XLOC_014110
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2800-2825
0.004
1
6mer
650-676
0.004
1
7mer
3745-3768
0.003
0
6mer
4303-4326
0.003
1
6mer
4166-4189
0.002
1
6mer
4115-4132
0.002
1
6mer
1096-1120
0.002
2
6mer
4005-4022
0.002
1
6mer
4085-4107
0.002
0
6mer
3987-4010
0.002
0
6mer
3919-3942
0.002
1
6mer
3937-3961
0.001
1
6mer
3712-3739
0.001
1
6mer
3792-3815
0.001
1
6mer
917-944
0.001
1
6mer
4074-4090
0.001
0
6mer
3810-3825
0.001
0
6mer
3781-3797
0.001
0
6mer
3943-3961
0.001
0
6mer
3908-3924
0.001
1
6mer
3890-3913
0.001
1
6mer
3878-3895
0.001
1
6mer
3956-3980
0.001
0
6mer
3975-3992
0.001
Not Conserved
6mer
4127-4143
0.001
0
6mer
3962-3980
0.001
Not Conserved
6mer
4050-4072
0.001
0
6mer
3378-3404
0.001
0
6mer
3827-3844
0.001
0
6mer
3839-3855
0.001
0
6mer
1876-1899
0.001
Not Conserved
6mer
3752-3768
0.001
0
6mer
1507-1521
0.001
Not Conserved
RP11-527N22.1
hsa-miR-125b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000624599
Biotype: TEC
Gene id: ENSG00000253123
Gene Name: RP11-527N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-780
0.033
1
7mer
3663-3677
0.008
Not Conserved
8mer
1488-1505
0.004
0
7mer
735-761
0.003
0
6mer
1693-1715
0.001
0
DYNLL1-AS1
hsa-miR-125b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500741
Biotype: antisense
Gene id: ENSG00000248008
Gene Name: DYNLL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
635-659
0.026
1
8mer
935-954
0.021
3
6mer
969-993
0.002
2
AP000350.5
hsa-miR-125b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609510
Biotype: lincRNA
Gene id: ENSG00000273295
Gene Name: AP000350.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5214-5235
0.008
Not Conserved
7mer
4846-4852
0.007
0
8mer
1334-1355
0.006
2
7mer
1134-1156
0.006
0
7mer
5597-5617
0.005
0
6mer
5477-5503
0.005
3
8mer
3268-3288
0.003
0
7mer
2931-2941
0.002
0
6mer
4192-4196
0.001
0
6mer
4422-4441
0.001
0
6mer
1488-1506
0.001
0
6mer
4057-4080
0.001
0
6mer
2287-2304
0.001
0
6mer
3758-3783
0.001
0
HOXA-AS2
hsa-miR-125b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521687
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-40
0.045
5
6mer
257-272
0.003
1
RP11-597D13.9
hsa-miR-125b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503611
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
360-382
0.042
3
7mer
2153-2170
0.004
2
6mer
554-575
0.002
5
RP11-586K12.11
hsa-miR-125b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568972
Biotype: lincRNA
Gene id: ENSG00000261569
Gene Name: RP11-586K12.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-53
0.043
0
6mer
335-357
0.005
Not Conserved
AC003075.4
hsa-miR-125b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419382
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-215
0.032
0
7mer
70-84
0.016
1
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