LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125b-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTD-2013N17.7
hsa-miR-125b-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000621050
Biotype: lincRNA
Gene id: ENSG00000277825
Gene Name: CTD-2013N17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-656
0.051
2
LINC00475
hsa-miR-125b-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434944
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-342
0.036
0
6mer
623-642
0.015
0
RP11-326A13.1
hsa-miR-125b-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555297
Biotype: lincRNA
Gene id: ENSG00000258888
Gene Name: RP11-326A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
228-250
0.050
1
RP11-407B7.1
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601913
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-91
0.043
0
6mer
565-589
0.007
3
INTS6-AS1
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596303
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
486-505
0.050
0
XLOC_011329
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-548
0.050
Not Conserved
XLOC_002401
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004502
Biotype: transcript isomorph
Gene id: XLOC_002401
Gene Name: XLOC_002401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-509
0.029
3
8mer
372-397
0.022
1
RP1-199J3.7
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607332
Biotype: antisense
Gene id: ENSG00000272017
Gene Name: RP1-199J3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
983-999
0.050
0
XLOC_013981
hsa-miR-125b-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5357-5368
0.027
1
7mer
661-688
0.012
1
6mer
5918-5930
0.002
1
6mer
4995-5014
0.002
0
6mer
3725-3749
0.001
1
6mer
2459-2479
0.001
0
7mer
3099-3122
0.001
1
6mer
4648-4661
0.001
1
6mer
4493-4513
0.001
0
7mer
3054-3078
0.001
0
7mer
5148-5164
0.001
0
6mer
2093-2117
0.001
0
6mer
4680-4696
0.001
3
XLOC_004041
hsa-miR-125b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008546
Biotype: transcript isomorph
Gene id: XLOC_004041
Gene Name: XLOC_004041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-440
0.035
1
7mer
152-174
0.015
0
RP11-407B7.1
hsa-miR-125b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593559
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-116
0.043
0
6mer
702-726
0.007
3
RP11-434D2.3
hsa-miR-125b-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
138-162
0.020
0
8mer
4342-4368
0.012
0
7mer
4075-4096
0.006
0
6mer
445-461
0.002
0
6mer
3577-3592
0.002
0
6mer
4166-4192
0.002
0
7mer
2106-2127
0.002
0
6mer
2656-2667
0.002
1
6mer
1340-1351
0.001
0
6mer
2992-3012
0.001
0
6mer
2220-2239
0.001
0
STX16-NPEPL1
hsa-miR-125b-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2940-2957
0.014
1
9mer
362-378
0.010
2
7mer
1502-1520
0.008
6
7mer
3065-3084
0.005
8
7mer
294-311
0.005
1
8mer+mismatch
451-469
0.002
3
6mer
3073-3098
0.002
7
6mer
1684-1697
0.002
1
6mer
371-394
0.001
4
6mer
1919-1929
0.001
1
6mer
1958-1976
0.000
2
AC006272.2
hsa-miR-125b-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596964
Biotype: lincRNA
Gene id: ENSG00000268316
Gene Name: AC006272.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-54
0.050
1
TTN-AS1
hsa-miR-125b-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585625
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-823
0.036
4
7mer
263-285
0.014
1
RP1-137D17.1
hsa-miR-125b-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433388
Biotype: lincRNA
Gene id: ENSG00000226194
Gene Name: RP1-137D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
515-528
0.045
0
7mer
201-224
0.004
0
RP11-812E19.7
hsa-miR-125b-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563019
Biotype: lincRNA
Gene id: ENSG00000260312
Gene Name: RP11-812E19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-219
0.049
0
PRMT5-AS1
hsa-miR-125b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1157-1177
0.031
1
7mer
1730-1753
0.013
9
6mer
1616-1630
0.003
4
6mer
225-249
0.002
Not Conserved
PCBP1-AS1
hsa-miR-125b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439670
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2037-2063
0.039
0
7mer
1854-1864
0.007
1
6mer
1392-1418
0.003
2
RP4-644L1.2
hsa-miR-125b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428495
Biotype: lincRNA
Gene id: ENSG00000229771
Gene Name: RP4-644L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1366-1371
0.029
9
8mer
1437-1460
0.017
2
6mer
595-610
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept