LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008072
hsa-miR-125a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-52
0.046
1
7mer
706-727
0.004
1
6mer
252-272
0.004
0
CTC-459F4.3
hsa-miR-125a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588636
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
546-571
0.044
0
6mer
446-470
0.010
0
XLOC_012397
hsa-miR-125a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025572
Biotype: transcript isomorph
Gene id: XLOC_012397
Gene Name: XLOC_012397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1912-1919
0.019
0
7mer
608-634
0.012
2
7mer
548-570
0.011
1
7mer
61-84
0.008
0
6mer
1452-1477
0.003
1
CTC-459F4.3
hsa-miR-125a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592404
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-693
0.053
0
XLOC_011329
hsa-miR-125a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-548
0.053
Not Conserved
AP001601.2
hsa-miR-125a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426771
Biotype: antisense
Gene id: ENSG00000223563
Gene Name: AP001601.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-325
0.046
2
8mer+mismatch
91-111
0.007
3
AC093390.1
hsa-miR-125a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426976
Biotype: antisense
Gene id: ENSG00000232057
Gene Name: AC093390.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-240
0.022
1
8mer
2842-2863
0.014
2
7mer
124-146
0.006
0
7mer
757-773
0.003
1
6mer
45-68
0.003
1
6mer
2310-2331
0.002
1
6mer
2462-2489
0.002
1
6mer
804-827
0.001
1
RP1-137D17.1
hsa-miR-125a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433388
Biotype: lincRNA
Gene id: ENSG00000226194
Gene Name: RP1-137D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
515-541
0.048
0
7mer
201-224
0.005
0
RP11-812E19.7
hsa-miR-125a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563019
Biotype: lincRNA
Gene id: ENSG00000260312
Gene Name: RP11-812E19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-219
0.052
0
XLOC_004452
hsa-miR-125a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009253
Biotype: transcript isomorph
Gene id: XLOC_004452
Gene Name: XLOC_004452
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1584-1591
0.039
0
7mer
689-707
0.013
1
RP11-597D13.9
hsa-miR-125a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503611
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
355-382
0.046
3
7mer
2163-2170
0.004
2
6mer
554-575
0.002
5
AC007277.3
hsa-miR-125a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428156
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2087-2106
0.049
3
6mer
1600-1610
0.003
1
XLOC_013543
hsa-miR-125a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3948-3971
0.010
1
7mer
3544-3568
0.005
0
6mer
226-247
0.004
1
6mer
428-454
0.003
1
6mer
575-601
0.002
1
7mer
1849-1874
0.002
Not Conserved
6mer
477-503
0.002
0
8mer
1901-1927
0.002
Not Conserved
6mer
3753-3776
0.002
Not Conserved
6mer
670-696
0.001
1
6mer
768-794
0.001
0
6mer
626-650
0.001
0
6mer
3114-3139
0.001
Not Conserved
6mer
532-552
0.001
0
6mer
1062-1088
0.001
0
6mer
3223-3248
0.001
Not Conserved
6mer
817-843
0.001
0
6mer
1111-1137
0.001
1
6mer
2666-2685
0.001
Not Conserved
6mer
915-941
0.001
0
6mer
2465-2489
0.001
Not Conserved
6mer
1160-1186
0.001
0
6mer
1454-1480
0.001
0
6mer
2306-2330
0.001
Not Conserved
6mer
866-892
0.001
Not Conserved
6mer
1356-1382
0.001
0
6mer
1258-1284
0.001
0
6mer
1215-1235
0.001
0
6mer
1650-1676
0.000
Not Conserved
6mer
1952-1976
0.000
Not Conserved
6mer
1552-1578
0.000
Not Conserved
6mer
1509-1529
0.000
Not Conserved
6mer
1607-1627
0.000
Not Conserved
RP11-132A1.3
hsa-miR-125a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429254
Biotype: antisense
Gene id: ENSG00000232301
Gene Name: RP11-132A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
670-689
0.052
0
CTC-493L21.1
hsa-miR-125a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506471
Biotype: lincRNA
Gene id: ENSG00000250544
Gene Name: CTC-493L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1584-1591
0.038
0
7mer
689-707
0.013
1
RP11-473C18.3
hsa-miR-125a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565685
Biotype: antisense
Gene id: ENSG00000261687
Gene Name: RP11-473C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-449
0.052
0
SHANK3
hsa-miR-125a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445220
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3972-3996
0.021
11
7mer
1021-1042
0.014
10
7mer
4243-4270
0.011
11
7mer
1280-1306
0.003
5
6mer
911-928
0.002
0
6mer
3850-3874
0.001
1
RP11-326A13.1
hsa-miR-125a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555297
Biotype: lincRNA
Gene id: ENSG00000258888
Gene Name: RP11-326A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
228-250
0.051
1
AC003075.4
hsa-miR-125a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436175
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-236
0.035
0
7mer
71-97
0.016
1
RP11-261P9.4
hsa-miR-125a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000530479
Biotype: sense_intronic
Gene id: ENSG00000254419
Gene Name: RP11-261P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-574
0.031
0
7mer
189-213
0.010
1
6mer
112-133
0.004
1
6mer
546-563
0.004
1
6mer
268-289
0.002
1
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