LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
INTS6-AS1
hsa-miR-125a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596303
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
486-505
0.055
0
AP003025.2
hsa-miR-125a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414466
Biotype: antisense
Gene id: ENSG00000237654
Gene Name: AP003025.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-340
0.023
2
8mer
3565-3583
0.014
2
7mer
591-614
0.011
2
6mer
1055-1059
0.006
8
6mer
1714-1737
0.001
1
6mer
1030-1034
0.001
0
XLOC_014389
hsa-miR-125a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029706
Biotype: transcript isomorph
Gene id: XLOC_014389
Gene Name: XLOC_014389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-194
0.052
1
7mer
227-243
0.003
0
MIR497HG
hsa-miR-125a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572453
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3570-3591
0.044
6
8mer
824-845
0.004
2
6mer
372-392
0.002
Not Conserved
6mer
965-980
0.002
3
6mer
1840-1860
0.001
1
6mer
2540-2555
0.001
0
7mer
2811-2833
0.001
Not Conserved
RP11-66D17.3
hsa-miR-125a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441272
Biotype: lincRNA
Gene id: ENSG00000237588
Gene Name: RP11-66D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3679-3702
0.020
4
8mer
3765-3788
0.016
3
8mer
2834-2841
0.009
1
6mer
3996-4022
0.004
3
8mer
2628-2655
0.003
2
6mer
3904-3927
0.002
1
6mer
1629-1652
0.001
0
XLOC_001047
hsa-miR-125a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000646
Biotype: transcript isomorph
Gene id: XLOC_001047
Gene Name: XLOC_001047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3677-3700
0.020
4
8mer
3763-3786
0.017
3
8mer
2832-2839
0.009
1
6mer
3994-4020
0.004
3
8mer
2626-2653
0.003
2
6mer
3902-3925
0.002
1
6mer
1627-1650
0.001
0
GLIDR
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000305709
Biotype: lincRNA
Gene id: ENSG00000170161
Gene Name: GLIDR
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-60
0.021
0
7mer
157-182
0.015
0
7mer
815-842
0.006
0
6mer
2023-2048
0.005
0
7mer
618-638
0.004
Not Conserved
6mer
776-796
0.002
0
7mer
468-489
0.002
Not Conserved
XLOC_009783
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.055
0
XLOC_013981
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5342-5368
0.031
1
7mer
661-688
0.013
1
6mer
5906-5930
0.002
1
6mer
4990-5014
0.001
0
6mer
3725-3749
0.001
1
7mer
3097-3122
0.001
1
6mer
4487-4513
0.001
0
6mer
2459-2479
0.001
0
6mer
4645-4661
0.001
1
7mer
3054-3078
0.001
0
7mer
5148-5164
0.001
0
6mer
2093-2117
0.001
0
6mer
4680-4696
0.001
3
RP11-38C18.3
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441773
Biotype: antisense
Gene id: ENSG00000238022
Gene Name: RP11-38C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-630
0.055
5
RP11-538D16.3
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428646
Biotype: lincRNA
Gene id: ENSG00000225982
Gene Name: RP11-538D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-119
0.046
1
7mer
835-855
0.009
2
FLJ16779
hsa-miR-125a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612722
Biotype: antisense
Gene id: ENSG00000275620
Gene Name: FLJ16779
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7535-7550
0.032
0
8mer
2200-2207
0.010
1
7mer
5800-5817
0.002
0
7mer
5545-5570
0.002
0
6mer
781-807
0.002
0
6mer
1288-1301
0.001
0
6mer
4042-4058
0.001
1
6mer
1050-1074
0.001
0
6mer
5082-5103
0.001
1
6mer
1382-1402
0.001
0
6mer
6182-6204
0.001
1
6mer
5814-5841
0.001
1
RP1-79C4.4
hsa-miR-125a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606154
Biotype: lincRNA
Gene id: ENSG00000271811
Gene Name: RP1-79C4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-297
0.031
1
7mer
204-230
0.017
3
7mer
820-842
0.007
2
AC008079.10
hsa-miR-125a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17804-17827
0.013
1
8mer
19788-19803
0.009
1
7mer
14894-14915
0.004
4
8mer
13221-13237
0.004
0
8mer
5407-5432
0.003
1
7mer
3862-3881
0.003
2
6mer
19517-19538
0.002
0
6mer
19975-19998
0.002
Not Conserved
6mer
5901-5927
0.001
2
6mer
15037-15059
0.001
1
6mer
19704-19724
0.001
1
6mer
2817-2821
0.001
1
6mer
8182-8209
0.001
1
6mer
7156-7172
0.001
0
6mer
4693-4715
0.001
1
6mer
963-981
0.001
1
6mer
1053-1076
0.001
1
6mer
6089-6106
0.001
0
6mer
808-826
0.001
1
6mer
2229-2234
0.001
0
6mer
5827-5853
0.001
0
RP11-108M9.3
hsa-miR-125a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453554
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-250
0.020
0
7mer
1141-1158
0.015
1
6mer
149-175
0.009
2
6mer
346-369
0.008
2
6mer
1152-1175
0.002
1
XLOC_002401
hsa-miR-125a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004502
Biotype: transcript isomorph
Gene id: XLOC_002401
Gene Name: XLOC_002401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-509
0.033
3
8mer
372-397
0.022
1
XLOC_011100
hsa-miR-125a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022830
Biotype: transcript isomorph
Gene id: XLOC_011100
Gene Name: XLOC_011100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6911-6935
0.031
1
7mer
7039-7057
0.008
1
7mer
5512-5536
0.007
1
7mer
5492-5516
0.003
1
8mer
3718-3738
0.003
Not Conserved
7mer
2593-2610
0.001
0
AC024132.1
hsa-miR-125a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382007
Biotype: lincRNA
Gene id: ENSG00000205830
Gene Name: AC024132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2257-2279
0.044
1
7mer
1458-1476
0.005
0
6mer
2162-2179
0.003
0
6mer
2140-2165
0.002
4
RP11-8L2.1
hsa-miR-125a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513489
Biotype: lincRNA
Gene id: ENSG00000250546
Gene Name: RP11-8L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-58
0.048
3
6mer
219-234
0.003
1
6mer
344-368
0.003
3
RP13-221M14.2
hsa-miR-125a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437631
Biotype: lincRNA
Gene id: ENSG00000233336
Gene Name: RP13-221M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-354
0.034
1
7mer
190-213
0.013
Not Conserved
7mer
348-373
0.006
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept