LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
MIR6818
hsa-miR-125a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24970-24992
0.009
2
8mer
23480-23504
0.005
0
7mer
48365-48386
0.004
1
7mer
36219-36238
0.003
0
6mer
24027-24048
0.002
7
7mer
43306-43323
0.002
0
7mer
42836-42862
0.002
0
6mer
32205-32210
0.002
2
7mer
14811-14836
0.002
0
6mer
26867-26884
0.002
1
7mer
47708-47729
0.002
3
6mer
46134-46152
0.002
3
7mer
39114-39138
0.002
5
6mer
41083-41087
0.002
5
7mer
44131-44148
0.002
3
6mer
21564-21587
0.002
1
6mer
48446-48466
0.002
1
6mer
4077-4103
0.002
0
6mer
8298-8318
0.001
1
6mer
5855-5882
0.001
4
6mer
10921-10931
0.001
0
6mer
5169-5188
0.001
1
6mer
14584-14608
0.001
1
6mer
11722-11744
0.001
1
6mer
19924-19949
0.001
3
6mer
34967-34990
0.001
1
6mer
39101-39120
0.001
9
6mer
14569-14589
0.000
0
GMDS-AS1
hsa-miR-125a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-93
0.052
2
6mer
295-321
0.003
2
6mer
5246-5273
0.002
1
6mer
2696-2712
0.001
1
6mer
6838-6863
0.001
0
6mer
1595-1621
0.001
Not Conserved
LINC01311
hsa-miR-125a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565162
Biotype: antisense
Gene id: ENSG00000260924
Gene Name: LINC01311
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1103-1130
0.041
1
6mer
1390-1394
0.007
3
6mer
69-93
0.004
1
6mer
1069-1090
0.002
5
6mer
844-860
0.002
1
6mer
1069-1084
0.002
1
6mer
650-672
0.001
Not Conserved
CTD-2201I18.1
hsa-miR-125a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503007
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
841-863
0.058
4
GNAS-AS1
hsa-miR-125a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443966
Biotype: antisense
Gene id: ENSG00000235590
Gene Name: GNAS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-565
0.058
4
RP11-757G1.6
hsa-miR-125a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-668
0.036
0
6mer
3184-3189
0.015
0
6mer
1916-1920
0.006
0
6mer
698-719
0.001
Not Conserved
LOC100652736
hsa-miR-125a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103767.1
Biotype: lincRNA
Gene id: NR_103767.1 (gene)
Gene Name: LOC100652736
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
792-819
0.043
1
6mer
1079-1083
0.007
3
6mer
533-549
0.002
1
6mer
758-779
0.002
5
6mer
758-773
0.002
1
6mer
339-361
0.001
Not Conserved
XLOC_001621
hsa-miR-125a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-590
0.057
1
XLOC_004336
hsa-miR-125a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009920
Biotype: transcript isomorph
Gene id: XLOC_004336
Gene Name: XLOC_004336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-138
0.057
1
RP11-23N2.4
hsa-miR-125a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562062
Biotype: antisense
Gene id: ENSG00000260618
Gene Name: RP11-23N2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-145
0.057
2
RNASEH2B-AS1
hsa-miR-125a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000593369
Biotype: antisense
Gene id: ENSG00000233672
Gene Name: RNASEH2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-464
0.057
0
RP11-128D14.1
hsa-miR-125a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577835
Biotype: lincRNA
Gene id: ENSG00000265425
Gene Name: RP11-128D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-653
0.057
2
RP11-386G11.10
hsa-miR-125a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547387
Biotype: antisense
Gene id: ENSG00000258017
Gene Name: RP11-386G11.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
556-582
0.040
1
6mer
545-563
0.009
10
6mer
829-852
0.007
10
RP11-710C12.1
hsa-miR-125a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605849
Biotype: antisense
Gene id: ENSG00000271474
Gene Name: RP11-710C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3088-3095
0.042
4
7mer
1271-1280
0.008
1
7mer
1521-1537
0.003
1
6mer
410-422
0.003
0
RP11-526K17.2
hsa-miR-125a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000458461
Biotype: antisense
Gene id: ENSG00000228539
Gene Name: RP11-526K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
390-416
0.056
2
XLOC_001338
hsa-miR-125a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003564
Biotype: transcript isomorph
Gene id: XLOC_001338
Gene Name: XLOC_001338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-282
0.056
0
XLOC_000346
hsa-miR-125a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001103
Biotype: transcript isomorph
Gene id: XLOC_000346
Gene Name: XLOC_000346
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-61
0.028
7
8mer
269-275
0.028
2
CTD-2034I21.2
hsa-miR-125a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576842
Biotype: lincRNA
Gene id: ENSG00000263082
Gene Name: CTD-2034I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
740-760
0.044
1
7mer
622-643
0.012
1
POU6F2-AS2
hsa-miR-125a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420243
Biotype: antisense
Gene id: ENSG00000233854
Gene Name: POU6F2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-306
0.056
5
GS1-358P8.4
hsa-miR-125a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2523-2546
0.056
7
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