LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP4-798A10.4
hsa-miR-125a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452795
Biotype: lincRNA
Gene id: ENSG00000224174
Gene Name: RP4-798A10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.062
1
AC079466.1
hsa-miR-125a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4364-4390
0.039
1
7mer
914-940
0.018
1
6mer
3084-3097
0.005
1
XLOC_007051
hsa-miR-125a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014969
Biotype: transcript isomorph
Gene id: XLOC_007051
Gene Name: XLOC_007051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
938-944
0.043
4
7mer
806-826
0.014
6
6mer
1058-1082
0.003
1
6mer
454-467
0.002
2
RP5-875O13.1
hsa-miR-125a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415386
Biotype: lincRNA
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1299-1325
0.021
0
7mer
1180-1203
0.018
1
7mer
391-406
0.015
1
6mer
1374-1400
0.005
1
6mer
374-397
0.003
1
XLOC_011726
hsa-miR-125a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024417
Biotype: transcript isomorph
Gene id: XLOC_011726
Gene Name: XLOC_011726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-30
0.050
0
7mer
75-96
0.010
1
6mer
1075-1094
0.001
1
CTBP1-AS2
hsa-miR-125a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
802-818
0.028
1
7mer
1982-2005
0.025
1
6mer
1625-1645
0.008
1
LINC01350
hsa-miR-125a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436955
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-564
0.061
1
RP11-989E6.8
hsa-miR-125a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568904
Biotype: lincRNA
Gene id: ENSG00000260921
Gene Name: RP11-989E6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-151
0.060
0
CELF2-AS1
hsa-miR-125a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000379256
Biotype: antisense
Gene id: ENSG00000181800
Gene Name: CELF2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.034
1
7mer
24-41
0.025
0
6mer
1543-1569
0.002
1
SRRM2-AS1
hsa-miR-125a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000382313
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1787-1808
0.027
2
6mer
16-32
0.006
1
7mer
488-510
0.004
1
7mer
1716-1743
0.004
1
8mer+mismatch
3298-3317
0.003
0
6mer
2951-2969
0.003
1
6mer
3394-3416
0.003
1
6mer
3220-3233
0.002
0
6mer
2694-2715
0.002
1
8mer
1625-1646
0.001
0
7mer
2668-2691
0.001
1
7mer
1474-1499
0.001
1
6mer
3200-3225
0.001
1
7mer
2029-2052
0.001
0
RP11-175O19.4
hsa-miR-125a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2368-2374
0.042
8
7mer
2674-2696
0.009
5
6mer
949-960
0.007
8
6mer
747-761
0.002
2
RP11-247A12.7
hsa-miR-125a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000600965
Biotype: lincRNA
Gene id: ENSG00000268707
Gene Name: RP11-247A12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-291
0.060
2
RP11-680F8.1
hsa-miR-125a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1821
0.031
3
8mer
1162-1188
0.021
0
7mer
1647-1664
0.003
0
6mer
455-479
0.001
0
6mer
1481-1500
0.001
2
6mer
1495-1520
0.001
1
6mer
1316-1342
0.001
0
6mer
1250-1268
0.000
Not Conserved
XLOC_013851
hsa-miR-125a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029192
Biotype: transcript isomorph
Gene id: XLOC_013851
Gene Name: XLOC_013851
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-285
0.031
0
8mer
126-141
0.029
0
XLOC_001126
hsa-miR-125a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002543
Biotype: transcript isomorph
Gene id: XLOC_001126
Gene Name: XLOC_001126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1519-1536
0.060
1
TTTY10
hsa-miR-125a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-12
0.059
0
RP11-384O8.1
hsa-miR-125a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587099
Biotype: lincRNA
Gene id: ENSG00000267034
Gene Name: RP11-384O8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
928-934
0.059
7
XLOC_003405
hsa-miR-125a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2596-2622
0.008
0
8mer+wobble
8150-8177
0.005
0
7mer
8411-8433
0.004
1
8mer
3443-3469
0.004
Not Conserved
8mer
5327-5348
0.004
Not Conserved
8mer
6551-6572
0.004
Not Conserved
6mer
9670-9674
0.004
0
8mer
6362-6383
0.004
Not Conserved
8mer
4432-4458
0.003
Not Conserved
8mer
4148-4169
0.003
Not Conserved
8mer
3350-3376
0.003
Not Conserved
7mer
2927-2945
0.002
Not Conserved
6mer
627-647
0.002
0
6mer
9256-9279
0.002
0
6mer
2340-2357
0.001
0
6mer
1410-1430
0.001
Not Conserved
6mer
1268-1288
0.001
0
6mer
1221-1240
0.001
0
6mer
1363-1383
0.001
0
6mer
1693-1713
0.001
Not Conserved
RP11-120M18.2
hsa-miR-125a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590353
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-333
0.059
8
RP4-591N18.2
hsa-miR-125a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417123
Biotype: antisense
Gene id: ENSG00000232564
Gene Name: RP4-591N18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1594-1621
0.034
0
8mer
1670-1688
0.023
1
6mer
574-600
0.003
1
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