LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTA-796E4.5
hsa-miR-125a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24234-24254
0.022
1
8mer
28566-28582
0.006
0
7mer
6205-6217
0.005
1
6mer
31528-31555
0.004
2
7mer
9986-10008
0.004
0
6mer
604-625
0.003
1
7mer
2341-2363
0.002
1
7mer
6857-6877
0.002
1
6mer
17803-17823
0.002
3
7mer
12370-12391
0.002
0
6mer
25247-25273
0.002
1
6mer
25779-25805
0.002
2
6mer
27551-27557
0.002
1
6mer
26635-26661
0.002
1
6mer
6716-6736
0.002
1
6mer
28272-28296
0.002
0
6mer
15208-15235
0.001
2
6mer
7371-7395
0.001
1
6mer
8230-8249
0.001
0
6mer
19005-19025
0.001
1
6mer
23314-23318
0.001
0
6mer
19377-19394
0.001
0
6mer
10476-10492
0.001
1
6mer
14226-14252
0.001
1
6mer
12078-12098
0.001
0
6mer
3992-4000
0.001
2
6mer
18230-18250
0.001
1
6mer
28898-28921
0.001
1
6mer
29011-29032
0.001
1
6mer
7427-7450
0.001
0
6mer
12525-12549
0.001
0
6mer
5430-5453
0.000
0
6mer
28340-28362
0.000
Not Conserved
6mer
3991-4007
0.000
1
LINC00663
hsa-miR-125a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1565-1572
0.059
1
7mer
2094-2119
0.010
0
6mer
2283-2306
0.006
1
6mer
2478-2498
0.003
0
CNTFR-AS1
hsa-miR-125a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436360
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-666
0.061
2
7mer
738-752
0.006
2
6mer
277-296
0.004
2
6mer
868-888
0.004
2
6mer
95-121
0.003
1
FLG-AS1
hsa-miR-125a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445097
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2094-2118
0.061
3
7mer
2417-2433
0.011
1
6mer
1982-1988
0.003
0
RP11-384P7.7
hsa-miR-125a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3213-3235
0.032
1
8mer
601-621
0.029
1
7mer
1804-1828
0.007
1
6mer
347-373
0.007
2
SPTY2D1-AS1
hsa-miR-125a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542172
Biotype: retained_intron
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-64
0.075
4
RP3-323A16.1
hsa-miR-125a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21449-21455
0.024
2
8mer
17461-17482
0.007
1
7mer
4919-4945
0.004
0
7mer
17212-17232
0.003
2
8mer
47197-47216
0.003
0
7mer
44545-44568
0.002
4
6mer
35910-35930
0.002
2
6mer
1587-1613
0.002
2
7mer
30421-30442
0.002
1
6mer
45198-45224
0.002
2
6mer
43395-43413
0.001
Not Conserved
6mer
48382-48406
0.001
0
6mer
39869-39894
0.001
0
6mer
16111-16120
0.001
4
6mer
41997-42020
0.001
1
6mer
3372-3395
0.001
0
6mer
24123-24131
0.001
1
6mer
43101-43125
0.001
3
6mer
8786-8802
0.001
0
6mer
40678-40702
0.001
2
6mer
21186-21200
0.001
0
6mer
16813-16836
0.001
2
6mer
47475-47489
0.001
0
7mer
52018-52038
0.001
Not Conserved
6mer
11320-11343
0.001
0
6mer
39239-39258
0.001
1
6mer
51997-52013
0.001
1
6mer
52121-52142
0.001
1
6mer
47559-47583
0.001
1
6mer
44262-44279
0.001
3
6mer
36046-36067
0.001
1
6mer
1756-1774
0.000
Not Conserved
6mer
40947-40971
0.000
0
6mer
40820-40834
0.000
1
RP1-60O19.1
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418134
Biotype: retained_intron
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-478
0.070
2
6mer
30-50
0.003
Not Conserved
XLOC_008883
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
247-273
0.046
1
8mer
512-539
0.028
1
RP11-382E9.1
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452199
Biotype: lincRNA
Gene id: ENSG00000231718
Gene Name: RP11-382E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1898-1905
0.051
2
8mer
149-173
0.020
1
6mer
1014-1039
0.003
1
XLOC_001194
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001807
Biotype: transcript isomorph
Gene id: XLOC_001194
Gene Name: XLOC_001194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-57
0.074
0
XLOC_013274
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4794-4808
0.066
1
6mer
6273-6291
0.005
0
8mer
2585-2611
0.002
Not Conserved
XLOC_013773
hsa-miR-125a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028422
Biotype: transcript isomorph
Gene id: XLOC_013773
Gene Name: XLOC_013773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.012
1
7mer
477-501
0.010
1
8mer
2689-2710
0.006
0
8mer
5103-5125
0.006
Not Conserved
7mer
5733-5741
0.004
Not Conserved
6mer
5658-5683
0.003
0
6mer
269-292
0.003
0
6mer
5443-5464
0.003
Not Conserved
6mer
5296-5322
0.002
0
6mer
905-929
0.002
0
6mer
5345-5371
0.002
0
6mer
1277-1302
0.001
0
6mer
1115-1139
0.001
0
6mer
5247-5271
0.001
Not Conserved
6mer
4815-4841
0.001
0
6mer
4959-4985
0.001
Not Conserved
6mer
5198-5224
0.001
Not Conserved
6mer
4766-4792
0.001
0
6mer
2900-2925
0.001
0
6mer
3059-3083
0.001
0
6mer
4861-4887
0.001
Not Conserved
6mer
2193-2217
0.001
Not Conserved
6mer
4573-4599
0.001
Not Conserved
6mer
3354-3378
0.001
0
6mer
2034-2058
0.001
Not Conserved
6mer
4717-4744
0.001
Not Conserved
6mer
3757-3782
0.001
0
6mer
4048-4074
0.001
Not Conserved
6mer
3659-3683
0.001
0
6mer
4527-4553
0.001
Not Conserved
6mer
3855-3881
0.001
Not Conserved
6mer
4380-4406
0.000
Not Conserved
6mer
4478-4504
0.000
Not Conserved
6mer
4195-4221
0.000
Not Conserved
6mer
3610-3636
0.000
Not Conserved
6mer
3512-3538
0.000
Not Conserved
6mer
3561-3587
0.000
Not Conserved
6mer
4331-4355
0.000
Not Conserved
6mer
3999-4026
0.000
Not Conserved
6mer
3708-3728
0.000
Not Conserved
6mer
2640-2664
0.000
Not Conserved
6mer
3806-3832
0.000
Not Conserved
6mer
4244-4263
0.000
Not Conserved
6mer
2585-2608
0.000
Not Conserved
6mer
2528-2549
0.000
Not Conserved
RP4-671O14.7
hsa-miR-125a-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16493-16516
0.011
1
8mer
14876-14903
0.010
1
8mer
13571-13592
0.008
1
7mer
1499-1515
0.008
2
7mer
865-880
0.008
2
8mer
10532-10558
0.004
Not Conserved
6mer
18200-18214
0.003
1
6mer
14426-14449
0.002
1
6mer
3777-3799
0.001
0
6mer
8948-8972
0.001
0
6mer
13774-13797
0.001
2
6mer
16207-16222
0.001
0
6mer
13416-13443
0.001
1
6mer
17484-17510
0.001
0
6mer
8090-8110
0.001
1
6mer
9748-9771
0.001
0
6mer
11516-11535
0.001
0
6mer
16130-16138
0.001
2
6mer
7156-7174
0.001
0
6mer
8863-8890
0.001
0
6mer
2221-2237
0.001
1
6mer
9330-9353
0.001
0
6mer
13270-13295
0.001
1
6mer
15726-15743
0.001
0
6mer
6289-6309
0.001
Not Conserved
6mer
16012-16027
0.001
0
6mer
7901-7926
0.001
Not Conserved
6mer
8017-8043
0.001
0
6mer
13217-13231
0.000
1
6mer
1462-1486
0.000
1
6mer
13554-13577
0.000
2
6mer
8933-8954
0.000
0
LOC100128885
hsa-miR-125a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
485-511
0.052
0
7mer
3442-3464
0.013
0
6mer
1015-1019
0.003
0
6mer
1828-1832
0.002
0
6mer
1899-1903
0.001
0
XLOC_000063
hsa-miR-125a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000848
Biotype: transcript isomorph
Gene id: XLOC_000063
Gene Name: XLOC_000063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.064
1
6mer
303-326
0.008
1
RP11-455F5.6
hsa-miR-125a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000610691
Biotype: antisense
Gene id: ENSG00000275371
Gene Name: RP11-455F5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
517-538
0.071
4
CTD-2139B15.4
hsa-miR-125a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505158
Biotype: lincRNA
Gene id: ENSG00000250822
Gene Name: CTD-2139B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-447
0.065
5
7mer
2153-2171
0.003
0
6mer
829-841
0.003
0
AE000658.22
hsa-miR-125a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000535893
Biotype: antisense
Gene id: ENSG00000257096
Gene Name: AE000658.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-374
0.060
7
6mer
414-436
0.007
1
6mer
221-245
0.004
5
CNTFR-AS1
hsa-miR-125a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453642
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-337
0.059
2
7mer
409-423
0.005
2
6mer
539-559
0.004
2
6mer
95-121
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept