LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-211N8.2
hsa-miR-125a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450704
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-126
0.056
1
7mer
223-248
0.031
1
6mer
1365-1390
0.012
1
AC004448.5
hsa-miR-125a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-506
0.096
1
XLOC_011811
hsa-miR-125a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024491
Biotype: transcript isomorph
Gene id: XLOC_011811
Gene Name: XLOC_011811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-234
0.091
1
6mer
154-178
0.003
0
MIR4534
hsa-miR-125a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36724-36747
0.012
Not Conserved
8mer
11269-11293
0.006
4
8mer
38797-38803
0.005
0
8mer
38277-38300
0.005
1
7mer
50311-50333
0.005
2
7mer
20532-20555
0.005
3
8mer
26974-27000
0.005
0
7mer
4349-4355
0.005
1
7mer
36318-36323
0.003
3
7mer
31804-31824
0.003
2
6mer
52830-52856
0.002
1
6mer
19676-19699
0.002
8
6mer
39358-39383
0.002
1
6mer
750-768
0.002
0
6mer
23895-23917
0.002
2
6mer
13314-13336
0.001
1
6mer
23660-23675
0.001
Not Conserved
6mer
4997-5015
0.001
3
6mer
40458-40479
0.001
1
6mer
18966-18991
0.001
1
6mer
18558-18585
0.001
1
6mer
51934-51938
0.001
1
7mer
26996-27023
0.001
Not Conserved
6mer
17966-17982
0.001
3
6mer
38515-38538
0.001
2
6mer
46819-46840
0.001
0
6mer
49678-49694
0.001
4
6mer
47756-47764
0.001
1
6mer
17541-17560
0.001
0
6mer
24974-24990
0.001
5
6mer
28065-28085
0.001
3
6mer
43398-43425
0.001
1
6mer
22178-22200
0.001
0
6mer
45817-45842
0.001
0
6mer
34279-34300
0.001
1
6mer
41775-41802
0.001
1
6mer
33829-33848
0.001
0
6mer
47921-47945
0.001
3
6mer
24276-24297
0.001
2
6mer
49813-49835
0.001
1
6mer
33168-33189
0.001
3
6mer
24505-24522
0.001
0
6mer
20293-20307
0.000
0
6mer
45858-45881
0.000
1
6mer
20308-20334
0.000
0
6mer
35944-35966
0.000
1
6mer
47934-47953
0.000
1
6mer
24340-24365
0.000
2
RP11-20L19.1
hsa-miR-125a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549669
Biotype: lincRNA
Gene id: ENSG00000257787
Gene Name: RP11-20L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-215
0.091
1
XLOC_009888
hsa-miR-125a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020569
Biotype: transcript isomorph
Gene id: XLOC_009888
Gene Name: XLOC_009888
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
314-340
0.091
1
RP11-111F5.4
hsa-miR-125a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
669-690
0.057
0
7mer
547-572
0.033
0
VIM-AS1
hsa-miR-125a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437232
Biotype: antisense
Gene id: ENSG00000229124
Gene Name: VIM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1313-1338
0.089
1
XLOC_009832
hsa-miR-125a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020515
Biotype: transcript isomorph
Gene id: XLOC_009832
Gene Name: XLOC_009832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
230-254
0.089
1
LL22NC03-86G7.1
hsa-miR-125a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24429-24446
0.010
2
8mer
34863-34889
0.006
1
8mer
3222-3242
0.006
2
8mer
9404-9424
0.005
1
7mer
22294-22319
0.004
0
6mer
287-291
0.004
1
8mer
3350-3374
0.003
1
7mer
2071-2087
0.003
0
8mer
25286-25308
0.002
1
7mer
11377-11404
0.002
0
8mer
9198-9221
0.002
0
6mer
113-133
0.002
4
6mer
31057-31078
0.002
2
7mer
22844-22849
0.002
4
6mer
30242-30260
0.002
2
6mer
21963-21988
0.001
5
6mer
20019-20030
0.001
1
6mer
20629-20653
0.001
5
6mer
35063-35088
0.001
1
6mer
14915-14940
0.001
1
6mer
7711-7729
0.001
0
6mer
25525-25548
0.001
6
6mer
4538-4564
0.001
1
6mer
22720-22746
0.001
1
6mer
7982-8004
0.001
1
7mer
24960-24985
0.001
0
6mer
29206-29233
0.001
3
6mer
13363-13384
0.001
0
6mer
26957-26971
0.001
1
6mer
25269-25294
0.001
1
6mer
34325-34343
0.001
1
6mer
6613-6632
0.001
2
6mer
6777-6800
0.001
1
6mer
20484-20501
0.001
1
6mer
6340-6362
0.001
0
6mer
20162-20182
0.001
2
6mer
2782-2805
0.001
1
6mer
9775-9801
0.001
1
6mer
1601-1626
0.001
1
6mer
2302-2320
0.001
0
6mer
12375-12391
0.001
1
6mer
31322-31345
0.001
2
6mer
10010-10032
0.001
1
6mer
18166-18181
0.001
1
6mer
16961-16981
0.001
0
6mer
11856-11873
0.001
Not Conserved
6mer
30276-30298
0.001
2
6mer
2868-2886
0.001
6
6mer
16776-16803
0.000
0
6mer
31586-31610
0.000
Not Conserved
6mer
12552-12573
0.000
0
6mer
6409-6434
0.000
4
6mer
17184-17198
0.000
1
6mer
17094-17115
0.000
0
6mer
34402-34424
0.000
1
6mer
17044-17069
0.000
0
PCAT19
hsa-miR-125a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1854-1860
0.055
1
8mer
376-388
0.028
0
6mer
2319-2343
0.003
0
XLOC_007089
hsa-miR-125a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-720
0.029
0
8mer
381-406
0.017
Not Conserved
6mer
956-981
0.008
1
6mer
2830-2850
0.004
1
6mer
8185-8205
0.003
1
6mer
10974-10993
0.003
0
6mer
8039-8063
0.003
1
6mer
1112-1116
0.003
0
8mer
6444-6465
0.003
Not Conserved
6mer
1503-1518
0.003
0
6mer
9898-9916
0.002
0
7mer
6229-6250
0.002
Not Conserved
6mer
6751-6777
0.001
Not Conserved
6mer
9217-9237
0.001
Not Conserved
6mer
8844-8865
0.001
0
6mer
354-379
0.001
Not Conserved
6mer
5203-5219
0.001
Not Conserved
6mer
4896-4913
0.001
Not Conserved
6mer
8130-8153
0.000
Not Conserved
RP11-46H11.3
hsa-miR-125a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-349
0.056
0
7mer
2643-2666
0.029
0
RP11-83A24.2
hsa-miR-125a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609359
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-188
0.085
2
RP11-83A24.2
hsa-miR-125a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608663
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
189-196
0.084
2
FAM27B
hsa-miR-125a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027422.1
Biotype: lincRNA
Gene id: NR_027422.1 (gene)
Gene Name: FAM27B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-334
0.052
0
7mer
387-397
0.030
0
RP11-449O16.2
hsa-miR-125a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438919
Biotype: sense_intronic
Gene id: ENSG00000229711
Gene Name: RP11-449O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-552
0.041
2
9mer
210-234
0.036
1
6mer
347-373
0.003
0
XLOC_006187
hsa-miR-125a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013551
Biotype: transcript isomorph
Gene id: XLOC_006187
Gene Name: XLOC_006187
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-257
0.081
0
XLOC_007084
hsa-miR-125a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015007
Biotype: transcript isomorph
Gene id: XLOC_007084
Gene Name: XLOC_007084
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-478
0.076
1
6mer
438-464
0.005
0
LINC01511
hsa-miR-125a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503067
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
608-628
0.079
1
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