LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2013N17.7
hsa-miR-125a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000621050
Biotype: lincRNA
Gene id: ENSG00000277825
Gene Name: CTD-2013N17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-653
0.051
2
DYNLL1-AS1
hsa-miR-125a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038854.1
Biotype: antisense
Gene id: NR_038854.1 (gene)
Gene Name: DYNLL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
925-952
0.025
3
9mer
625-649
0.025
1
6mer
959-980
0.002
2
XLOC_008075
hsa-miR-125a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-177
0.039
0
6mer
292-311
0.009
0
6mer
258-283
0.003
Not Conserved
RP11-102K13.5
hsa-miR-125a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612156
Biotype: lincRNA
Gene id: ENSG00000278309
Gene Name: RP11-102K13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-244
0.020
0
8mer
279-303
0.005
0
7mer
5168-5185
0.003
1
7mer
5072-5098
0.002
1
8mer
4832-4850
0.002
0
6mer
3799-3822
0.002
5
7mer
1631-1657
0.002
1
7mer
4892-4913
0.001
0
8mer
5024-5042
0.001
Not Conserved
6mer
1998-2021
0.001
0
7mer
4389-4404
0.001
0
7mer
5097-5114
0.001
2
6mer
5775-5792
0.001
1
6mer
4140-4166
0.001
2
7mer
4928-4946
0.001
0
7mer
4904-4927
0.001
Not Conserved
7mer
4953-4970
0.001
0
7mer
4677-4694
0.001
0
7mer
4062-4082
0.001
1
8mer
1538-1562
0.001
0
6mer
5036-5059
0.001
0
6mer
5084-5102
0.001
0
6mer
4940-4958
0.000
0
6mer
4749-4766
0.000
Not Conserved
6mer
4123-4144
0.000
Not Conserved
6mer
4335-4358
0.000
Not Conserved
SOCS2-AS1
hsa-miR-125a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547845
Biotype: retained_intron
Gene id: ENSG00000246985
Gene Name: SOCS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-102
0.051
2
PSMD5-AS1
hsa-miR-125a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1321-1327
0.032
1
7mer
1636-1652
0.019
0
XLOC_012685
hsa-miR-125a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026338
Biotype: transcript isomorph
Gene id: XLOC_012685
Gene Name: XLOC_012685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1104-1123
0.026
1
7mer
1194-1209
0.015
1
7mer
674-701
0.011
0
DYNLL1-AS1
hsa-miR-125a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500741
Biotype: antisense
Gene id: ENSG00000248008
Gene Name: DYNLL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
635-659
0.025
1
8mer
935-962
0.024
3
6mer
969-990
0.002
2
CTD-2201I18.1
hsa-miR-125a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514042
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2302-2324
0.048
4
6mer
1082-1102
0.002
1
6mer
1265-1283
0.001
1
XLOC_004041
hsa-miR-125a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008546
Biotype: transcript isomorph
Gene id: XLOC_004041
Gene Name: XLOC_004041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-425
0.035
1
7mer
152-174
0.016
0
CTC-459F4.3
hsa-miR-125a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585827
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-535
0.041
0
6mer
410-434
0.010
0
RP11-38M8.1
hsa-miR-125a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609619
Biotype: lincRNA
Gene id: ENSG00000273297
Gene Name: RP11-38M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-427
0.036
1
7mer
528-546
0.009
0
6mer
449-467
0.005
3
RP4-782L23.2
hsa-miR-125a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443012
Biotype: antisense
Gene id: ENSG00000226883
Gene Name: RP4-782L23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-581
0.050
3
XLOC_012567
hsa-miR-125a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026154
Biotype: transcript isomorph
Gene id: XLOC_012567
Gene Name: XLOC_012567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
997-1020
0.020
1
9mer
1146-1164
0.014
0
8mer
688-710
0.013
1
6mer
1244-1259
0.002
0
6mer
566-588
0.001
0
LINC00475
hsa-miR-125a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434944
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-342
0.036
0
6mer
616-642
0.014
0
RP1-199J3.7
hsa-miR-125a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607332
Biotype: antisense
Gene id: ENSG00000272017
Gene Name: RP1-199J3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
977-999
0.050
0
TTN-AS1
hsa-miR-125a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585625
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-823
0.036
4
7mer
263-285
0.013
1
RP4-644L1.2
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428495
Biotype: lincRNA
Gene id: ENSG00000229771
Gene Name: RP4-644L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1366-1371
0.029
9
8mer
1437-1461
0.017
2
6mer
595-600
0.003
1
AC006272.2
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596964
Biotype: lincRNA
Gene id: ENSG00000268316
Gene Name: AC006272.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-55
0.049
1
XLOC_011319
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023472
Biotype: transcript isomorph
Gene id: XLOC_011319
Gene Name: XLOC_011319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-322
0.049
3
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