LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-445O3.3
hsa-miR-125a-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2683-2699
0.043
0
6mer
1152-1179
0.006
0
CASC9
hsa-miR-125a-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504531
Biotype: lincRNA
Gene id: ENSG00000249395
Gene Name: CASC9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-224
0.041
1
6mer
95-108
0.004
1
6mer
839-861
0.004
1
RP11-263K19.4
hsa-miR-125a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453136
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-478
0.026
10
7mer
294-319
0.023
10
XLOC_005659
hsa-miR-125a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012129
Biotype: transcript isomorph
Gene id: XLOC_005659
Gene Name: XLOC_005659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-444
0.029
0
7mer
759-778
0.015
0
6mer
54-75
0.004
0
LINC01079
hsa-miR-125a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000431171
Biotype: lincRNA
Gene id: ENSG00000229609
Gene Name: LINC01079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-139
0.048
1
LL22NC03-22D1.1
hsa-miR-125a-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28237-28250
0.008
0
8mer
6203-6221
0.006
1
7mer
1192-1219
0.006
4
7mer
20253-20277
0.005
1
7mer
21176-21201
0.004
0
7mer
25485-25506
0.004
1
6mer
28752-28771
0.003
1
7mer
6353-6368
0.003
1
6mer
16710-16725
0.002
1
6mer
2348-2370
0.001
1
6mer
26876-26898
0.001
0
6mer
6008-6026
0.001
1
6mer
6664-6682
0.001
1
6mer
12010-12022
0.001
0
6mer
13085-13101
0.001
0
6mer
22133-22159
0.001
1
6mer
22153-22171
0.000
Not Conserved
ZNF571-AS1
hsa-miR-125a-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586013
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-303
0.048
1
TTTY23B
hsa-miR-125a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000451467
Biotype: lincRNA
Gene id: ENSG00000237069
Gene Name: TTTY23B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-376
0.033
Not Conserved
6mer
300-320
0.015
0
AC018647.3
hsa-miR-125a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449644
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-162
0.026
8
7mer
1348-1365
0.012
1
8mer
587-612
0.010
3
TTTY23
hsa-miR-125a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000452889
Biotype: lincRNA
Gene id: ENSG00000239225
Gene Name: TTTY23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-160
0.032
Not Conserved
6mer
193-213
0.015
0
RP11-13N13.5
hsa-miR-125a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584148
Biotype: sense_intronic
Gene id: ENSG00000264188
Gene Name: RP11-13N13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-144
0.048
0
RP11-266L9.5
hsa-miR-125a-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571219
Biotype: lincRNA
Gene id: ENSG00000262155
Gene Name: RP11-266L9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1441-1459
0.034
1
7mer
834-857
0.011
0
6mer
1812-1828
0.003
0
AC002519.8
hsa-miR-125a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1164-1183
0.026
1
6mer
2703-2717
0.013
1
6mer
893-913
0.008
1
FAM66C
hsa-miR-125a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
565-582
0.022
0
6mer
313-333
0.014
0
6mer
297-315
0.010
0
6mer
378-400
0.001
Not Conserved
RP11-570H19.2
hsa-miR-125a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443359
Biotype: lincRNA
Gene id: ENSG00000227167
Gene Name: RP11-570H19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
197-213
0.047
6
ARHGEF19-AS1
hsa-miR-125a-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457809
Biotype: antisense
Gene id: ENSG00000234166
Gene Name: ARHGEF19-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-425
0.047
2
CTC-265F19.1
hsa-miR-125a-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-86
0.016
0
7mer
804-823
0.014
1
6mer
670-688
0.012
1
6mer
369-391
0.005
0
RP11-363E6.4
hsa-miR-125a-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606235
Biotype: lincRNA
Gene id: ENSG00000272425
Gene Name: RP11-363E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1994-2014
0.026
0
7mer
548-571
0.012
2
8mer
122-138
0.009
0
RP1-309I22.2
hsa-miR-125a-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28005-28027
0.010
3
8mer
7243-7260
0.007
1
7mer
21396-21417
0.005
3
6mer
28590-28607
0.004
2
7mer
13585-13611
0.004
1
6mer
14245-14258
0.003
9
6mer
24912-24930
0.002
3
6mer
22873-22898
0.002
4
8mer+mismatch
24122-24138
0.002
3
8mer
20850-20865
0.002
0
6mer
11326-11351
0.001
1
6mer
2656-2675
0.001
1
6mer
22918-22938
0.001
1
6mer
22144-22162
0.001
Not Conserved
6mer
20928-20954
0.001
2
6mer
27413-27434
0.001
Not Conserved
6mer
21696-21720
0.000
0
ZNF337-AS1
hsa-miR-125a-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000455791
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-283
0.035
1
9mer
509-536
0.011
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept