LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
ADAMTS19-AS1
hsa-miR-125a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502827
Biotype: antisense
Gene id: ENSG00000249421
Gene Name: ADAMTS19-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.053
6
XX-C00717C00720L.1
hsa-miR-125a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623684
Biotype: antisense
Gene id: ENSG00000279182
Gene Name: XX-C00717C00720L.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-141
0.025
7
8mer
313-337
0.018
5
8mer
510-533
0.005
0
6mer
35-55
0.003
4
6mer
90-106
0.003
1
GABPB1-AS1
hsa-miR-125a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7806-7830
0.010
2
7mer
15525-15544
0.006
1
6mer
15793-15813
0.004
1
7mer
11991-12018
0.004
1
7mer
4959-4979
0.003
0
7mer
14730-14749
0.003
1
7mer
12317-12341
0.003
0
7mer
14313-14324
0.002
0
7mer
12413-12436
0.002
1
7mer
12138-12160
0.002
1
7mer
11215-11240
0.002
0
6mer
7155-7178
0.002
3
7mer
12506-12532
0.002
0
6mer
11492-11516
0.002
1
7mer
10603-10621
0.001
0
6mer
4359-4377
0.001
1
7mer
12577-12601
0.001
0
6mer
5091-5114
0.001
0
6mer
10947-10964
0.001
0
6mer
10518-10536
0.001
1
RP11-61I13.3
hsa-miR-125a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2931-2950
0.051
10
6mer
1180-1206
0.002
1
RP11-263K19.4
hsa-miR-125a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430312
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-539
0.029
10
7mer
357-380
0.024
10
CTD-3162L10.1
hsa-miR-125a-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593173
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-245
0.052
1
RP11-137H15.4
hsa-miR-125a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619737
Biotype: lincRNA
Gene id: ENSG00000276008
Gene Name: RP11-137H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1056-1077
0.049
1
6mer
894-918
0.003
2
CTD-3162L10.1
hsa-miR-125a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590845
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-296
0.052
1
OVCH1-AS1
hsa-miR-125a-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550906
Biotype: antisense
Gene id: ENSG00000257599
Gene Name: OVCH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
604-618
0.026
2
8mer
222-238
0.026
4
XLOC_006701
hsa-miR-125a-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014596
Biotype: transcript isomorph
Gene id: XLOC_006701
Gene Name: XLOC_006701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-514
0.031
0
7mer
782-805
0.012
0
7mer
298-320
0.009
1
LINC01314
hsa-miR-125a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560778
Biotype: lincRNA
Gene id: ENSG00000259417
Gene Name: LINC01314
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-800
0.017
2
8mer
5768-5786
0.012
3
9mer
4847-4865
0.008
0
6mer
6313-6327
0.005
8
6mer
6297-6315
0.004
10
6mer
4578-4602
0.002
5
6mer
4335-4346
0.001
5
6mer
5844-5868
0.001
2
6mer
3160-3172
0.001
Not Conserved
6mer
4487-4503
0.001
2
RP11-15H20.6
hsa-miR-125a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2386-2410
0.042
0
6mer
663-679
0.010
1
AL133245.2
hsa-miR-125a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1128-1149
0.021
1
7mer
1084-1108
0.013
1
6mer
120-136
0.009
1
6mer
120-145
0.009
1
RBM5-AS1
hsa-miR-125a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_045388.1
Biotype: antisense
Gene id: NR_045388.1 (gene)
Gene Name: RBM5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
447-469
0.052
14
CTD-2015A6.1
hsa-miR-125a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512952
Biotype: lincRNA
Gene id: ENSG00000248393
Gene Name: CTD-2015A6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-106
0.052
5
XLOC_006130
hsa-miR-125a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013484
Biotype: transcript isomorph
Gene id: XLOC_006130
Gene Name: XLOC_006130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-96
0.051
1
CTD-2081C10.1
hsa-miR-125a-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504552
Biotype: lincRNA
Gene id: ENSG00000250447
Gene Name: CTD-2081C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-39
0.051
5
ZNF571-AS1
hsa-miR-125a-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589802
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-198
0.051
1
RP11-244H18.1
hsa-miR-125a-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621705
Biotype: antisense
Gene id: ENSG00000276888
Gene Name: RP11-244H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-200
0.026
0
8mer
1616-1636
0.026
1
AC018647.3
hsa-miR-125a-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432866
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-869
0.030
3
7mer
430-457
0.021
8
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