LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP5-1198O20.4
hsa-miR-125a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453688
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-577
0.048
1
6mer
552-568
0.012
1
7mer
310-332
0.009
0
XLOC_013504
hsa-miR-125a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027921
Biotype: transcript isomorph
Gene id: XLOC_013504
Gene Name: XLOC_013504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-156
0.019
0
6mer
70-90
0.017
0
6mer
589-612
0.016
0
6mer
100-123
0.016
0
AC022007.5
hsa-miR-125a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1378-1395
0.060
0
6mer
788-806
0.008
0
XLOC_001621
hsa-miR-125a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
569-583
0.035
1
6mer
1609-1625
0.013
1
7mer
1145-1164
0.007
0
7mer
1280-1299
0.005
0
6mer
867-890
0.004
0
6mer
1840-1862
0.003
Not Conserved
OTX2-AS1
hsa-miR-125a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554358
Biotype: lincRNA
Gene id: ENSG00000248550
Gene Name: OTX2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.068
9
XLOC_014323
hsa-miR-125a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029662
Biotype: transcript isomorph
Gene id: XLOC_014323
Gene Name: XLOC_014323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-115
0.066
4
RP11-680F20.10
hsa-miR-125a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-550
0.054
0
6mer
637-658
0.012
0
LCMT1-AS2
hsa-miR-125a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1608-1630
0.031
1
6mer
5363-5389
0.015
1
6mer
5178-5201
0.009
1
6mer
4249-4266
0.005
1
6mer
2262-2284
0.005
1
LINC00894
hsa-miR-125a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452864
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-355
0.049
0
8mer
79-102
0.013
Not Conserved
6mer
518-539
0.004
Not Conserved
LOC100130744
hsa-miR-125a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046285.1
Biotype: antisense
Gene id: NR_046285.1 (gene)
Gene Name: LOC100130744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-182
0.065
11
PPP3CB-AS1
hsa-miR-125a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000620559
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-48
0.065
5
RP13-991F5.2
hsa-miR-125a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-393
0.043
0
7mer
569-588
0.022
0
XLOC_009222
hsa-miR-125a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5404-5423
0.046
0
6mer
465-489
0.011
0
7mer
4277-4299
0.009
0
SCGB1B2P
hsa-miR-125a-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595013
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-27
0.064
1
SLC8A1-AS1
hsa-miR-125a-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417875
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-114
0.064
1
LINC00889
hsa-miR-125a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-91
0.054
1
6mer
2455-2474
0.006
1
6mer
1809-1825
0.003
1
CTA-228A9.4
hsa-miR-125a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15209-15224
0.008
3
7mer
9898-9920
0.007
4
8mer
12876-12891
0.004
9
7mer
14490-14511
0.004
1
7mer
7382-7402
0.004
1
7mer
7990-8009
0.003
0
6mer
4848-4871
0.003
10
7mer
11038-11059
0.002
1
7mer
6133-6157
0.002
1
7mer
19487-19511
0.002
0
7mer
14174-14198
0.002
Not Conserved
7mer
11703-11722
0.002
0
7mer
5597-5618
0.002
1
6mer
19451-19470
0.002
0
6mer
549-570
0.002
1
6mer
13245-13258
0.002
1
7mer
10148-10170
0.002
1
7mer
10052-10076
0.001
Not Conserved
6mer
16968-16987
0.001
2
6mer
12876-12900
0.001
9
7mer
7477-7496
0.001
1
6mer
2037-2058
0.001
1
6mer
12798-12813
0.001
2
6mer
18882-18896
0.001
0
6mer
15963-15981
0.001
1
6mer
8597-8615
0.001
0
6mer
9070-9091
0.001
0
6mer
14726-14746
0.001
2
CTA-342B11.3
hsa-miR-125a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5078-5095
0.006
Not Conserved
7mer
14449-14469
0.005
1
7mer
3761-3779
0.004
1
7mer
2589-2603
0.004
0
8mer
14491-14508
0.004
1
7mer
19373-19395
0.003
1
7mer
23584-23605
0.003
0
7mer
18084-18107
0.003
1
7mer
7927-7951
0.003
0
6mer
403-423
0.002
0
6mer
6899-6914
0.002
1
7mer
10351-10371
0.002
0
6mer
20837-20861
0.002
0
7mer
9376-9400
0.002
0
7mer
16819-16840
0.002
0
6mer
1281-1305
0.002
Not Conserved
7mer
22862-22886
0.002
Not Conserved
6mer
7231-7254
0.002
1
6mer
9965-9991
0.001
Not Conserved
6mer
7573-7597
0.001
1
6mer
19564-19588
0.001
0
7mer
22956-22979
0.001
Not Conserved
7mer
3901-3919
0.001
1
6mer
22520-22546
0.001
Not Conserved
7mer
19608-19629
0.001
1
6mer
13349-13370
0.001
Not Conserved
6mer
5922-5935
0.001
0
6mer
16496-16515
0.001
0
6mer
3309-3335
0.001
0
6mer
6050-6068
0.001
1
6mer
6185-6203
0.001
0
SCGB1B2P
hsa-miR-125a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597830
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-27
0.063
1
AC018647.3
hsa-miR-125a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430518
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-460
0.037
3
7mer
119-146
0.026
8
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