LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
CTD-3162L10.1
hsa-miR-125a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586345
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-793
0.088
1
RP11-284F21.9
hsa-miR-125a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606343
Biotype: lincRNA
Gene id: ENSG00000272068
Gene Name: RP11-284F21.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-112
0.067
3
7mer
2871-2896
0.010
1
7mer
2776-2797
0.005
1
6mer
722-743
0.002
2
6mer
1789-1808
0.002
0
6mer
2046-2070
0.002
2
LL22NC03-86G7.1
hsa-miR-125a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36385-36409
0.007
1
7mer
24232-24250
0.007
8
8mer
888-915
0.005
0
7mer
22262-22280
0.004
1
7mer
37335-37361
0.004
0
8mer
20716-20743
0.004
0
8mer
14992-15012
0.003
1
6mer
32154-32173
0.003
10
7mer
25849-25870
0.002
1
7mer
3853-3874
0.002
1
6mer
30406-30431
0.002
6
6mer
25575-25597
0.002
5
6mer
32812-32833
0.002
10
6mer
19623-19645
0.002
1
7mer
30001-30020
0.002
0
9mer
5130-5148
0.002
0
6mer
27807-27824
0.002
6
7mer
6749-6776
0.001
0
6mer
31598-31624
0.001
3
7mer
30009-30029
0.001
1
6mer
19005-19021
0.001
0
6mer
29544-29563
0.001
1
6mer
14510-14528
0.001
1
6mer
20131-20156
0.001
1
7mer
3999-4021
0.001
1
6mer
26668-26684
0.001
1
6mer
28060-28077
0.001
0
6mer
23933-23950
0.001
1
6mer
35726-35747
0.001
1
6mer
793-819
0.001
1
7mer
29580-29604
0.001
1
6mer
3550-3568
0.001
1
6mer
13217-13236
0.001
1
6mer
1025-1049
0.001
0
7mer
22334-22349
0.001
0
6mer
16241-16267
0.001
1
6mer
16600-16615
0.001
1
6mer
10313-10334
0.001
0
6mer
9251-9272
0.001
0
6mer
30767-30783
0.001
0
6mer
12440-12459
0.001
1
6mer
4257-4277
0.001
1
6mer
14679-14692
0.001
2
6mer
33808-33823
0.001
2
6mer
11703-11724
0.001
1
6mer
6369-6394
0.001
0
6mer
21009-21028
0.001
1
6mer
28172-28197
0.001
1
7mer
18443-18468
0.001
1
6mer
22004-22021
0.001
0
6mer
17842-17863
0.001
1
6mer
16899-16916
0.000
0
6mer
1411-1429
0.000
0
6mer
7481-7505
0.000
1
8mer+mismatch
13016-13036
0.000
Not Conserved
XLOC_008295
hsa-miR-125a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-325
0.036
0
7mer
4056-4080
0.023
0
8mer
1354-1380
0.013
0
6mer
1314-1336
0.007
0
6mer
4152-4170
0.004
0
6mer
1579-1597
0.001
Not Conserved
TTTY15
hsa-miR-125a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-325
0.036
0
7mer
4056-4080
0.023
0
8mer
1354-1380
0.013
0
6mer
1314-1336
0.007
0
6mer
4152-4170
0.004
0
6mer
1579-1597
0.001
Not Conserved
LOC284581
hsa-miR-125a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-369
0.029
1
6mer
576-596
0.015
1
6mer
1929-1952
0.011
1
6mer
1541-1557
0.011
1
6mer
643-661
0.010
1
6mer
779-802
0.006
1
RP11-408O19.5
hsa-miR-125a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605480
Biotype: antisense
Gene id: ENSG00000271631
Gene Name: RP11-408O19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-609
0.083
3
RP4-639J15.3
hsa-miR-125a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
908-933
0.060
1
6mer
122-140
0.009
1
6mer
250-262
0.006
0
6mer
349-368
0.005
0
CH507-216K13.2
hsa-miR-125a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623370
Biotype: lincRNA
Gene id: ENSG00000279851
Gene Name: CH507-216K13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-128
0.009
0
7mer
386-402
0.007
0
7mer
254-274
0.006
0
8mer
1202-1225
0.005
0
7mer
1565-1590
0.004
Not Conserved
7mer
1023-1044
0.004
0
6mer
1624-1645
0.003
0
6mer
1513-1536
0.003
0
6mer
290-311
0.003
0
6mer
184-202
0.003
0
6mer
530-547
0.002
0
7mer
886-912
0.002
0
7mer
928-948
0.002
0
6mer
400-419
0.002
0
7mer
1056-1080
0.002
0
6mer
1327-1352
0.002
0
6mer
858-875
0.002
0
6mer
1037-1062
0.002
0
6mer
1235-1260
0.002
0
6mer
749-767
0.002
0
6mer
120-146
0.002
Not Conserved
6mer
1100-1117
0.002
0
6mer
1169-1189
0.001
0
6mer
1255-1279
0.001
0
6mer
960-984
0.001
0
6mer
768-785
0.001
0
6mer
985-1003
0.001
0
6mer
1118-1136
0.001
0
6mer
951-974
0.001
Not Conserved
RP11-175O19.4
hsa-miR-125a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3095-3111
0.073
9
6mer
449-462
0.003
1
6mer
2160-2187
0.003
1
AC114776.3
hsa-miR-125a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1573-1599
0.027
1
7mer
3825-3848
0.013
0
8mer
3357-3376
0.013
0
7mer
939-961
0.010
1
6mer
1076-1099
0.007
1
7mer
68-92
0.005
Not Conserved
6mer
1734-1750
0.002
0
RP3-477O4.14
hsa-miR-125a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416260
Biotype: antisense
Gene id: ENSG00000230155
Gene Name: RP3-477O4.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-245
0.077
10
RP3-477O4.14
hsa-miR-125a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000444933
Biotype: antisense
Gene id: ENSG00000230155
Gene Name: RP3-477O4.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-245
0.077
10
RP11-680F20.10
hsa-miR-125a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569238
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-132
0.065
0
6mer
219-238
0.012
0
RP3-477O4.14
hsa-miR-125a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000453914
Biotype: antisense
Gene id: ENSG00000230155
Gene Name: RP3-477O4.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-416
0.076
10
XLOC_006092
hsa-miR-125a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014132
Biotype: transcript isomorph
Gene id: XLOC_006092
Gene Name: XLOC_006092
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-140
0.054
0
6mer
497-515
0.020
1
XLOC_001719
hsa-miR-125a-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003915
Biotype: transcript isomorph
Gene id: XLOC_001719
Gene Name: XLOC_001719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-339
0.073
1
MUC19
hsa-miR-125a-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9089-9109
0.008
1
7mer
10079-10099
0.005
0
7mer
6735-6757
0.005
1
7mer
11156-11176
0.005
0
7mer
10229-10249
0.004
1
7mer
9782-9802
0.004
Not Conserved
7mer
19964-19990
0.003
2
6mer
24033-24057
0.003
4
6mer
24139-24158
0.003
3
8mer+wobble
23612-23635
0.003
2
7mer
7421-7435
0.002
1
7mer
15354-15365
0.002
Not Conserved
6mer
2296-2309
0.002
6
7mer
12143-12163
0.002
Not Conserved
7mer
9812-9832
0.002
1
6mer
23351-23368
0.002
0
6mer
22933-22954
0.002
1
6mer
7407-7423
0.002
0
7mer
5847-5872
0.001
2
8mer
5646-5665
0.001
2
6mer
6042-6058
0.001
2
6mer
3645-3659
0.001
1
6mer
3371-3392
0.001
3
7mer
5847-5861
0.001
1
6mer
20183-20206
0.001
1
6mer
17944-17960
0.001
Not Conserved
6mer
5618-5632
0.001
0
6mer
23032-23056
0.001
1
6mer
22556-22576
0.001
1
6mer
21771-21787
0.001
Not Conserved
6mer
21029-21053
0.000
Not Conserved
CTD-3162L10.1
hsa-miR-125a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586488
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-358
0.072
1
MIR6818
hsa-miR-125a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2093-2117
0.015
3
7mer
48623-48648
0.007
9
6mer
43168-43183
0.005
14
8mer
29082-29099
0.005
6
6mer
38976-38996
0.004
12
7mer
17878-17899
0.004
1
7mer
7120-7142
0.003
2
7mer
11772-11794
0.003
1
6mer
6655-6678
0.002
1
7mer
10420-10442
0.002
0
7mer
13351-13375
0.002
0
6mer
31778-31789
0.002
1
7mer
8026-8050
0.002
1
6mer
45464-45483
0.002
3
7mer
18063-18087
0.002
Not Conserved
6mer
20318-20334
0.002
0
6mer
412-433
0.002
0
6mer
7579-7604
0.001
4
6mer
5690-5716
0.001
1
6mer
27980-28005
0.001
1
7mer
6427-6449
0.001
0
6mer
21381-21406
0.001
0
6mer
36239-36263
0.001
0
8mer+wobble
47515-47531
0.001
1
6mer
45068-45086
0.001
0
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