LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-87E22.2
hsa-miR-125a-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1125-1141
0.020
1
9mer
2290-2317
0.007
1
6mer
3798-3814
0.005
1
7mer
741-767
0.005
0
6mer
502-519
0.004
2
6mer
2119-2139
0.002
3
6mer
2958-2983
0.001
0
6mer
1752-1772
0.001
1
6mer
3028-3053
0.001
3
XLOC_002811
hsa-miR-125a-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006218
Biotype: transcript isomorph
Gene id: XLOC_002811
Gene Name: XLOC_002811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-124
0.029
1
7mer
774-801
0.007
1
6mer
761-786
0.006
1
6mer
513-537
0.005
0
RP3-412A9.17
hsa-miR-125a-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16435-16459
0.011
0
7mer
423-444
0.005
0
7mer
16533-16552
0.005
0
7mer
1888-1910
0.004
1
8mer+wobble
9168-9185
0.004
0
6mer
15902-15913
0.002
1
7mer
2699-2720
0.002
1
6mer
16213-16235
0.002
0
7mer
9773-9793
0.002
0
6mer
7685-7710
0.002
3
6mer
6448-6473
0.001
0
7mer
10535-10562
0.001
0
6mer
4377-4389
0.001
1
6mer
15404-15422
0.001
0
7mer
9813-9834
0.001
0
6mer
9472-9488
0.001
Not Conserved
6mer
4932-4954
0.001
1
XLOC_007467
hsa-miR-125a-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016076
Biotype: transcript isomorph
Gene id: XLOC_007467
Gene Name: XLOC_007467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-31
0.046
1
CTC-367F4.1
hsa-miR-125a-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504204
Biotype: lincRNA
Gene id: ENSG00000251031
Gene Name: CTC-367F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-107
0.046
1
RP11-627G23.1
hsa-miR-125a-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4365-4380
0.033
1
7mer
10-33
0.008
1
6mer
1734-1750
0.003
7
7mer
3493-3515
0.002
1
7mer
1857-1877
0.001
1
RP11-830F9.6
hsa-miR-125a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378347
Biotype: antisense
Gene id: ENSG00000205018
Gene Name: RP11-830F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1590-1609
0.004
0
7mer
1523-1543
0.004
0
7mer
1456-1476
0.004
0
7mer
1389-1409
0.004
0
7mer
583-603
0.004
0
7mer
1322-1342
0.003
0
7mer
1255-1275
0.003
0
7mer
1188-1208
0.003
0
7mer
650-670
0.003
0
7mer
1121-1141
0.002
0
7mer
717-737
0.002
0
7mer
1054-1074
0.002
0
7mer
987-1007
0.002
0
7mer
852-873
0.002
0
7mer
920-940
0.002
0
7mer
784-805
0.002
Not Conserved
GS1-124K5.3
hsa-miR-125a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412091
Biotype: lincRNA
Gene id: ENSG00000223473
Gene Name: GS1-124K5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-192
0.045
1
RMST
hsa-miR-125a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552411
Biotype: retained_intron
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-57
0.045
9
AC097468.4
hsa-miR-125a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441450
Biotype: antisense
Gene id: ENSG00000224090
Gene Name: AC097468.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1616-1642
0.004
3
6mer
1676-1692
0.004
2
6mer
1650-1667
0.003
3
6mer
1568-1591
0.003
3
6mer
1601-1617
0.003
2
6mer
1519-1539
0.002
2
6mer
1337-1360
0.002
2
6mer
1472-1488
0.002
2
6mer
1440-1463
0.002
2
6mer
1145-1161
0.002
2
6mer
1001-1014
0.002
2
6mer
1395-1411
0.002
2
6mer
1365-1385
0.002
2
6mer
1414-1437
0.002
2
6mer
1098-1114
0.002
1
6mer
1210-1233
0.001
1
6mer
1261-1284
0.001
0
6mer
1242-1258
0.001
1
6mer
1024-1039
0.001
2
6mer
1073-1089
0.001
1
6mer
1184-1207
0.001
1
6mer
1048-1064
0.001
1
RP11-15B24.5
hsa-miR-125a-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585998
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-751
0.045
6
GTF3C2-AS1
hsa-miR-125a-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585326
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-603
0.045
3
C1orf180
hsa-miR-125a-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000370624
Biotype: lincRNA
Gene id: ENSG00000180869
Gene Name: C1orf180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2688-2711
0.036
1
7mer
2404-2430
0.009
0
6mer
1607-1625
0.001
Not Conserved
RP11-727F15.11
hsa-miR-125a-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000596071
Biotype: antisense
Gene id: ENSG00000267811
Gene Name: RP11-727F15.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-394
0.045
5
RP11-188P20.3
hsa-miR-125a-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607513
Biotype: antisense
Gene id: ENSG00000271941
Gene Name: RP11-188P20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-23
0.045
3
RP11-48F14.1
hsa-miR-125a-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-225
0.034
2
6mer
422-442
0.006
4
6mer
1738-1763
0.005
3
LOC100128885
hsa-miR-125a-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
74-95
0.018
1
8mer
417-437
0.014
0
6mer
4171-4191
0.006
0
6mer
3077-3100
0.003
0
6mer
986-1009
0.002
0
6mer
1127-1153
0.002
0
RP11-681L8.1
hsa-miR-125a-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000521680
Biotype: sense_overlapping
Gene id: ENSG00000254044
Gene Name: RP11-681L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-60
0.045
6
XLOC_000371
hsa-miR-125a-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001130
Biotype: transcript isomorph
Gene id: XLOC_000371
Gene Name: XLOC_000371
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-201
0.045
1
GTF3C2-AS1
hsa-miR-125a-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592265
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-562
0.044
3
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