LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
LINC00972
hsa-miR-1248
0.872
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438065
Biotype: lincRNA
Gene id: ENSG00000225128
Gene Name: LINC00972
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-232
0.014
0
7mer
191-208
0.013
0
7mer
218-240
0.010
0
6mer
267-281
0.005
4
LOC283070
hsa-miR-1248
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2184-2203
0.035
11
6mer
624-647
0.004
2
6mer
420-445
0.003
1
MGC15885
hsa-miR-1248
0.871
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026897.1
Biotype: antisense
Gene id: NR_026897.1 (gene)
Gene Name: MGC15885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-38
0.014
7
8mer
162-185
0.011
1
7mer
306-312
0.011
3
6mer
1880-1895
0.005
2
LOC148696
hsa-miR-1248
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026817.1
Biotype: lincRNA
Gene id: NR_026817.1 (gene)
Gene Name: LOC148696
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
944-969
0.010
3
7mer
3840-3861
0.006
0
7mer
3452-3471
0.005
4
7mer
1361-1381
0.005
0
7mer
3161-3180
0.005
2
9mer
3396-3411
0.004
0
6mer
3216-3241
0.003
4
6mer
1895-1916
0.002
2
6mer
2380-2398
0.001
4
XLOC_007693
hsa-miR-1248
0.870
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015563
Biotype: transcript isomorph
Gene id: XLOC_007693
Gene Name: XLOC_007693
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1566-1580
0.001
Not Conserved
LL22NC03-86G7.1
hsa-miR-1248
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16556-16580
0.004
1
8mer
4270-4292
0.004
1
7mer
21596-21614
0.003
0
7mer
7854-7873
0.003
0
7mer
32424-32435
0.003
0
6mer
3317-3341
0.002
1
6mer
8272-8294
0.002
2
6mer
7237-7251
0.002
1
7mer
15712-15738
0.002
1
8mer
1503-1524
0.001
0
6mer
27162-27185
0.001
2
6mer
15974-15999
0.001
2
6mer
26547-26567
0.001
1
6mer
26708-26728
0.001
0
6mer
17915-17921
0.001
1
6mer
25998-26020
0.001
1
6mer
32593-32612
0.001
1
6mer
6789-6813
0.001
0
6mer
2101-2120
0.001
0
6mer
12545-12566
0.001
2
6mer
36230-36257
0.001
0
6mer
25242-25260
0.001
0
6mer
1650-1661
0.001
0
6mer
17807-17828
0.001
0
6mer
8354-8378
0.001
0
6mer
22006-22030
0.001
1
6mer
2156-2180
0.001
3
6mer
27175-27197
0.000
2
XLOC_014400
hsa-miR-1248
0.869
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029724
Biotype: transcript isomorph
Gene id: XLOC_014400
Gene Name: XLOC_014400
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
800-821
0.025
4
8mer
533-547
0.014
1
6mer
1501-1518
0.003
1
KCTD21-AS1
hsa-miR-1248
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532831
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-500
0.032
1
7mer
488-509
0.006
1
6mer
577-594
0.003
1
RP11-43F13.3
hsa-miR-1248
0.868
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399869
Biotype: antisense
Gene id: ENSG00000215246
Gene Name: RP11-43F13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3259-3276
0.033
2
7mer
2735-2760
0.009
1
LINC00559
hsa-miR-1248
0.867
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3744-3767
0.018
2
7mer
3164-3177
0.011
Not Conserved
7mer
1066-1082
0.005
0
6mer
3623-3648
0.004
2
6mer
2112-2136
0.002
1
6mer
955-975
0.002
1
XLOC_001712
hsa-miR-1248
0.867
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003907
Biotype: transcript isomorph
Gene id: XLOC_001712
Gene Name: XLOC_001712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-77
0.041
3
TSNAX-DISC1
hsa-miR-1248
0.867
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-174
0.025
8
6mer
214-234
0.008
8
6mer
1384-1403
0.002
7
6mer
2882-2908
0.002
Not Conserved
6mer
2167-2184
0.002
2
6mer
2510-2524
0.001
3
6mer
5261-5283
0.001
2
LINC00559
hsa-miR-1248
0.867
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569476
Biotype: lincRNA
Gene id: ENSG00000261446
Gene Name: LINC00559
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3744-3767
0.018
2
7mer
3164-3177
0.010
Not Conserved
7mer
1066-1082
0.005
0
6mer
3623-3648
0.004
2
6mer
2112-2136
0.002
1
6mer
955-975
0.002
1
LOC101928523
hsa-miR-1248
0.866
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_109803.1
Biotype: lincRNA
Gene id: NR_109803.1 (gene)
Gene Name: LOC101928523
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-259
0.021
0
6mer
223-246
0.020
1
XLOC_006268
hsa-miR-1248
0.866
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013605
Biotype: transcript isomorph
Gene id: XLOC_006268
Gene Name: XLOC_006268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-116
0.041
2
XLOC_011789
hsa-miR-1248
0.866
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024467
Biotype: transcript isomorph
Gene id: XLOC_011789
Gene Name: XLOC_011789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3168-3193
0.030
3
6mer
2808-2835
0.005
4
7mer
987-1013
0.003
0
6mer
1792-1818
0.003
5
HAGLR
hsa-miR-1248
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452365
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-175
0.030
6
6mer
11-32
0.011
5
RP11-128P17.1
hsa-miR-1248
0.865
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591029
Biotype: lincRNA
Gene id: ENSG00000267425
Gene Name: RP11-128P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-220
0.027
2
7mer
179-205
0.014
2
XLOC_004800
hsa-miR-1248
0.865
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010315
Biotype: transcript isomorph
Gene id: XLOC_004800
Gene Name: XLOC_004800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-297
0.016
4
8mer
3939-3963
0.011
Not Conserved
6mer
566-588
0.004
2
6mer
3581-3600
0.003
0
7mer
2190-2213
0.002
1
6mer
1012-1026
0.002
0
6mer
3183-3204
0.002
2
6mer
2227-2239
0.001
Not Conserved
RP5-921G16.1
hsa-miR-1248
0.865
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484322
Biotype: antisense
Gene id: ENSG00000242593
Gene Name: RP5-921G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4031-4049
0.014
1
7mer
3977-4001
0.012
1
7mer
1014-1034
0.009
0
9mer
1757-1772
0.004
1
6mer
408-428
0.003
1
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