LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
RP11-885N19.6
hsa-miR-1248
0.881
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428088
Biotype: lincRNA
Gene id: ENSG00000237419
Gene Name: RP11-885N19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-224
0.043
0
LINC01111
hsa-miR-1248
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518732
Biotype: lincRNA
Gene id: ENSG00000254300
Gene Name: LINC01111
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1394-1412
0.026
1
7mer
130-144
0.017
2
XLOC_003120
hsa-miR-1248
0.881
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006508
Biotype: transcript isomorph
Gene id: XLOC_003120
Gene Name: XLOC_003120
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-368
0.011
0
7mer
364-389
0.010
0
7mer
264-290
0.009
1
6mer
358-377
0.005
0
6mer
373-395
0.004
0
6mer
323-341
0.004
0
RP11-166D19.1
hsa-miR-1248
0.880
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530072
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-66
0.043
6
RP3-395M20.9
hsa-miR-1248
0.880
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424215
Biotype: antisense
Gene id: ENSG00000228037
Gene Name: RP3-395M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-563
0.024
0
6mer
418-437
0.019
1
RP11-166D19.1
hsa-miR-1248
0.879
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528986
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2975-3001
0.043
6
PAQR9-AS1
hsa-miR-1248
0.878
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593321
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-268
0.019
0
7mer
264-276
0.012
0
7mer
195-218
0.009
Not Conserved
6mer
214-230
0.003
Not Conserved
FAM95B1
hsa-miR-1248
0.878
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585417
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
345-362
0.039
0
7mer
377-404
0.004
Not Conserved
THTPA
hsa-miR-1248
0.878
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556354
Biotype: antisense
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-117
0.026
5
7mer
367-392
0.015
4
6mer
606-630
0.002
Not Conserved
XLOC_006786
hsa-miR-1248
0.878
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-381
0.043
0
CTA-796E4.5
hsa-miR-1248
0.877
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-583
0.006
1
7mer
28718-28742
0.005
0
6mer
24310-24335
0.004
5
7mer
13165-13181
0.003
2
6mer
30881-30902
0.003
1
6mer
22421-22438
0.002
2
7mer
2189-2208
0.002
2
6mer
6139-6159
0.002
1
7mer
3725-3744
0.002
1
7mer
24320-24344
0.002
1
6mer
27176-27187
0.001
1
6mer
10148-10173
0.001
2
6mer
9852-9875
0.001
1
6mer
29587-29607
0.001
1
6mer
28930-28954
0.001
1
6mer
15184-15206
0.001
0
6mer
7278-7298
0.001
0
6mer
30206-30229
0.001
Not Conserved
6mer
12353-12376
0.001
0
6mer
13219-13239
0.001
2
6mer
2221-2239
0.001
0
SC22CB-109E1.1
hsa-miR-1248
0.877
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9120-9136
0.016
1
7mer
172-192
0.010
0
8mer
4874-4892
0.006
0
7mer
8666-8687
0.006
0
6mer
9495-9515
0.003
0
6mer
6894-6920
0.001
1
6mer
7375-7398
0.001
0
LINC00102
hsa-miR-1248
0.877
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445785
Biotype: lincRNA
Gene id: ENSG00000230542
Gene Name: LINC00102
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-208
0.038
0
6mer
167-193
0.005
0
RP5-965G21.4
hsa-miR-1248
0.877
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2186-2202
0.020
1
8mer
1928-1951
0.012
0
6mer
646-667
0.005
1
6mer
911-928
0.003
1
6mer
760-780
0.002
0
RP11-757G1.6
hsa-miR-1248
0.877
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
136-155
0.022
0
7mer
614-635
0.015
0
6mer
1446-1457
0.007
0
CTA-125H2.2
hsa-miR-1248
0.876
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000597614
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-558
0.021
2
7mer
30-54
0.016
1
6mer
347-366
0.003
1
6mer
244-267
0.002
1
RP11-419L4.1
hsa-miR-1248
0.875
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503542
Biotype: lincRNA
Gene id: ENSG00000250193
Gene Name: RP11-419L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-410
0.042
2
CTA-929C8.9
hsa-miR-1248
0.874
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3487-3510
0.004
0
7mer
21032-21046
0.004
0
7mer
22160-22184
0.004
1
7mer
4304-4326
0.004
1
7mer
21963-21986
0.003
0
6mer
20501-20526
0.003
0
7mer
14615-14635
0.002
1
6mer
9222-9247
0.002
1
6mer
18795-18817
0.002
1
6mer
4906-4930
0.002
3
6mer
18436-18450
0.002
1
6mer
3847-3869
0.002
1
7mer
20761-20785
0.002
Not Conserved
6mer
18489-18513
0.002
3
6mer
18559-18577
0.001
3
6mer
19207-19228
0.001
1
6mer
15816-15839
0.001
Not Conserved
6mer
17776-17796
0.001
0
XLOC_005140
hsa-miR-1248
0.874
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011658
Biotype: transcript isomorph
Gene id: XLOC_005140
Gene Name: XLOC_005140
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-71
0.027
1
7mer
288-302
0.011
1
6mer
184-195
0.004
0
RP11-177B4.2
hsa-miR-1248
0.872
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564513
Biotype: lincRNA
Gene id: ENSG00000260120
Gene Name: RP11-177B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1726-1733
0.035
1
7mer
1453-1476
0.007
Not Conserved
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