LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
XLOC_010752
hsa-miR-1248
0.895
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022420
Biotype: transcript isomorph
Gene id: XLOC_010752
Gene Name: XLOC_010752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-113
0.026
0
8mer
1667-1688
0.016
1
6mer
189-213
0.004
1
RP11-503C24.2
hsa-miR-1248
0.894
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424343
Biotype: lincRNA
Gene id: ENSG00000237987
Gene Name: RP11-503C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-339
0.045
2
XLOC_008184
hsa-miR-1248
0.893
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017069
Biotype: transcript isomorph
Gene id: XLOC_008184
Gene Name: XLOC_008184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-212
0.022
1
7mer
180-201
0.015
3
6mer
234-255
0.005
0
6mer
676-699
0.004
0
RP3-395M20.7
hsa-miR-1248
0.891
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456687
Biotype: antisense
Gene id: ENSG00000225931
Gene Name: RP3-395M20.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1056-1081
0.017
1
6mer
1200-1224
0.016
1
6mer
1149-1171
0.012
1
RP1-309I22.2
hsa-miR-1248
0.890
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12811-12830
0.004
11
7mer
24987-25013
0.004
4
6mer
22577-22600
0.003
11
6mer
18088-18112
0.003
4
6mer
26148-26170
0.002
5
7mer
7454-7470
0.002
1
7mer
21850-21871
0.002
0
9mer
5291-5303
0.002
1
7mer
4778-4803
0.002
1
6mer
25302-25328
0.002
2
7mer
1210-1236
0.002
0
6mer
26476-26501
0.002
1
6mer
5715-5734
0.001
2
6mer
17735-17753
0.001
2
6mer
10748-10771
0.001
3
6mer
15822-15848
0.001
1
6mer
14125-14146
0.001
1
6mer
9910-9928
0.001
1
6mer
2287-2307
0.001
1
6mer
4661-4680
0.001
0
6mer
3676-3697
0.001
0
6mer
2601-2626
0.001
0
6mer
1533-1550
0.001
1
6mer
16102-16124
0.001
1
6mer
2981-3002
0.001
0
6mer
18185-18208
0.001
1
6mer
12844-12862
0.000
0
TSNAX-DISC1
hsa-miR-1248
0.890
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028398.1
Biotype: sense
Gene id: NR_028398.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-174
0.028
8
6mer
214-234
0.009
8
6mer
1003-1022
0.003
7
6mer
2184-2198
0.002
3
6mer
1786-1803
0.002
2
RP11-280K24.1
hsa-miR-1248
0.889
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557308
Biotype: lincRNA
Gene id: ENSG00000259111
Gene Name: RP11-280K24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-416
0.045
0
RP11-693J15.5
hsa-miR-1248
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4032-4049
0.008
1
7mer
10356-10374
0.008
1
7mer
934-955
0.006
1
6mer
605-629
0.006
3
7mer
7244-7267
0.004
0
6mer
1105-1130
0.003
3
6mer
10432-10444
0.003
1
6mer
5659-5685
0.002
4
6mer
3447-3470
0.002
1
6mer
4080-4102
0.001
2
6mer
7312-7338
0.001
1
6mer
7414-7436
0.001
1
AC079466.1
hsa-miR-1248
0.886
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
465-485
0.012
1
6mer
1013-1039
0.012
1
6mer
638-655
0.008
1
6mer
679-699
0.007
1
6mer
3000-3026
0.004
1
6mer
2941-2959
0.001
Not Conserved
XLOC_004457
hsa-miR-1248
0.886
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010010
Biotype: transcript isomorph
Gene id: XLOC_004457
Gene Name: XLOC_004457
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1809-1834
0.026
6
7mer
2443-2460
0.009
0
6mer
130-146
0.005
1
6mer
909-924
0.003
1
6mer
1974-1993
0.001
1
NUTM2B-AS1
hsa-miR-1248
0.885
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000495430
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-268
0.040
1
6mer
780-799
0.004
0
AC083900.1
hsa-miR-1248
0.885
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421964
Biotype: sense_intronic
Gene id: ENSG00000225111
Gene Name: AC083900.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-386
0.044
5
RP11-552D8.1
hsa-miR-1248
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446560
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-37
0.026
1
7mer
272-291
0.017
1
XLOC_009124
hsa-miR-1248
0.884
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019298
Biotype: transcript isomorph
Gene id: XLOC_009124
Gene Name: XLOC_009124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1845-1868
0.024
5
7mer
1598-1610
0.014
4
7mer
592-618
0.006
0
RP11-513I15.6
hsa-miR-1248
0.883
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6865-6887
0.023
1
8mer
4967-4979
0.008
1
8mer
1661-1678
0.004
1
6mer
984-1009
0.003
2
6mer
392-412
0.002
0
6mer
3813-3831
0.002
0
6mer
5290-5312
0.001
2
6mer
3830-3857
0.001
3
RP1-167O22.1
hsa-miR-1248
0.883
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000623256
Biotype: lincRNA
Gene id: ENSG00000279082
Gene Name: RP1-167O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1173-1192
0.033
0
6mer
524-549
0.006
4
6mer
959-974
0.003
0
6mer
377-395
0.002
1
RP3-449M8.9
hsa-miR-1248
0.882
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602790
Biotype: lincRNA
Gene id: ENSG00000270000
Gene Name: RP3-449M8.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-384
0.039
4
6mer
331-353
0.004
1
RP4-704D21.2
hsa-miR-1248
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425109
Biotype: lincRNA
Gene id: ENSG00000234225
Gene Name: RP4-704D21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-280
0.044
2
XLOC_006850
hsa-miR-1248
0.881
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014769
Biotype: transcript isomorph
Gene id: XLOC_006850
Gene Name: XLOC_006850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1500
0.028
1
7mer
220-234
0.015
2
XLOC_002606
hsa-miR-1248
0.881
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005976
Biotype: transcript isomorph
Gene id: XLOC_002606
Gene Name: XLOC_002606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-458
0.034
1
6mer
456-482
0.006
4
6mer
564-580
0.003
0
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