LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
XLOC_000633
hsa-miR-1248
0.906
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
882-908
0.016
1
7mer
598-618
0.015
1
7mer
3825-3844
0.011
4
6mer
2981-3002
0.003
4
6mer
5246-5263
0.002
2
6mer
5918-5934
0.001
0
AL450226.2
hsa-miR-1248
0.905
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414776
Biotype: antisense
Gene id: ENSG00000225084
Gene Name: AL450226.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-436
0.022
3
6mer
398-421
0.014
8
6mer
602-626
0.012
9
CPEB2-AS1
hsa-miR-1248
0.905
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500394
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-490
0.023
3
7mer
1141-1157
0.020
1
6mer
1396-1412
0.005
1
LL22NC03-22D1.1
hsa-miR-1248
0.905
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27063-27084
0.008
1
7mer
21544-21562
0.007
1
7mer
7384-7408
0.005
1
7mer
18570-18584
0.005
2
8mer
5521-5543
0.003
1
6mer
7678-7703
0.002
1
6mer
15400-15417
0.002
2
6mer
14541-14562
0.002
1
6mer
11315-11334
0.002
0
8mer
14586-14604
0.002
0
6mer
23959-23980
0.002
1
6mer
12754-12779
0.002
2
6mer
17056-17065
0.001
1
6mer
25515-25527
0.001
1
6mer
9263-9280
0.001
0
6mer
27205-27226
0.001
0
6mer
4041-4062
0.001
1
7mer
25523-25541
0.001
0
6mer
26710-26735
0.001
0
6mer
7721-7747
0.001
1
RP11-441O15.3
hsa-miR-1248
0.904
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
651-665
0.016
3
8mer
2812-2831
0.012
1
6mer
2882-2895
0.007
0
6mer
1108-1122
0.004
2
6mer
883-905
0.003
1
6mer
31-57
0.003
0
6mer
1269-1291
0.002
1
XLOC_005365
hsa-miR-1248
0.904
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011333
Biotype: transcript isomorph
Gene id: XLOC_005365
Gene Name: XLOC_005365
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
846-866
0.032
7
7mer
469-486
0.015
1
LINC01133
hsa-miR-1248
0.904
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423943
Biotype: lincRNA
Gene id: ENSG00000224259
Gene Name: LINC01133
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-442
0.018
0
7mer
494-512
0.010
Not Conserved
7mer
508-528
0.008
Not Conserved
7mer
500-520
0.008
Not Conserved
6mer
664-676
0.003
1
CTD-2314G24.2
hsa-miR-1248
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-504
0.024
2
7mer
470-482
0.007
0
6mer
5881-5902
0.004
6
6mer
1810-1826
0.004
5
6mer
6611-6632
0.003
1
6mer
6496-6519
0.002
0
6mer
5449-5476
0.002
4
XLOC_004961
hsa-miR-1248
0.903
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009756
Biotype: transcript isomorph
Gene id: XLOC_004961
Gene Name: XLOC_004961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2635-2660
0.024
0
8mer
2927-2944
0.022
1
6mer
2428-2449
0.002
1
LOC101927190
hsa-miR-1248
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104675.1
Biotype: antisense
Gene id: NR_104675.1 (gene)
Gene Name: LOC101927190
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2809-2834
0.024
0
8mer
3101-3118
0.021
1
6mer
2602-2623
0.002
1
RP11-552D8.1
hsa-miR-1248
0.903
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430623
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-209
0.029
1
7mer
444-463
0.018
1
XLOC_007503
hsa-miR-1248
0.903
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016664
Biotype: transcript isomorph
Gene id: XLOC_007503
Gene Name: XLOC_007503
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-189
0.030
1
7mer
418-437
0.011
0
6mer
303-326
0.006
0
LOC388553
hsa-miR-1248
0.902
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038267.1
Biotype: sense
Gene id: NR_038267.1 (gene)
Gene Name: LOC388553
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-234
0.043
9
6mer
310-332
0.004
3
XLOC_001671
hsa-miR-1248
0.902
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10381-10393
0.013
Not Conserved
6mer
9629-9648
0.005
0
7mer
5422-5436
0.004
Not Conserved
7mer
6570-6585
0.004
0
6mer
9044-9067
0.004
0
6mer
8493-8508
0.003
0
6mer
5750-5763
0.003
0
6mer
8078-8102
0.002
0
6mer
7099-7119
0.002
Not Conserved
6mer
9737-9760
0.002
Not Conserved
6mer
5758-5774
0.001
0
6mer
7268-7291
0.001
0
6mer
2371-2395
0.001
Not Conserved
6mer
1011-1031
0.001
Not Conserved
6mer
9161-9179
0.001
Not Conserved
6mer
7231-7256
0.001
Not Conserved
RP11-250B2.3
hsa-miR-1248
0.901
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452402
Biotype: lincRNA
Gene id: ENSG00000233967
Gene Name: RP11-250B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-496
0.047
7
XLOC_003234
hsa-miR-1248
0.901
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2114-2138
0.028
1
7mer
2007-2031
0.013
2
6mer
1985-2005
0.006
0
RP4-671O14.7
hsa-miR-1248
0.900
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12179-12204
0.008
0
6mer
18344-18360
0.004
0
6mer
18145-18159
0.004
1
6mer
2827-2852
0.003
2
7mer
2236-2259
0.003
1
7mer
15954-15981
0.003
1
6mer
356-375
0.003
0
7mer
11561-11581
0.003
0
8mer
4448-4468
0.003
0
6mer
797-821
0.003
1
6mer
11383-11399
0.002
2
6mer
11254-11280
0.002
1
6mer
1366-1383
0.001
0
6mer
15749-15773
0.001
0
6mer
15883-15898
0.001
1
9mer
12086-12111
0.001
0
7mer
15733-15754
0.001
1
6mer
15549-15574
0.001
0
6mer
12735-12762
0.001
Not Conserved
XLOC_011424
hsa-miR-1248
0.900
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023625
Biotype: transcript isomorph
Gene id: XLOC_011424
Gene Name: XLOC_011424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-293
0.014
2
7mer
464-476
0.014
4
7mer
229-251
0.012
0
6mer
91-104
0.007
2
RP11-680F20.10
hsa-miR-1248
0.899
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-148
0.031
0
6mer
595-614
0.015
0
RP11-516C1.1
hsa-miR-1248
0.896
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558047
Biotype: antisense
Gene id: ENSG00000259595
Gene Name: RP11-516C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-173
0.038
8
6mer
62-80
0.008
5
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