LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
XLOC_013010
hsa-miR-1248
0.922
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1535-1553
0.051
0
FAM95B1
hsa-miR-1248
0.922
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586172
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
345-362
0.046
0
7mer
510-537
0.005
Not Conserved
LINC00511
hsa-miR-1248
0.919
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581183
Biotype: lincRNA
Gene id: ENSG00000227036
Gene Name: LINC00511
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-425
0.028
3
7mer
480-492
0.009
1
7mer
196-218
0.007
1
6mer
425-444
0.003
1
6mer
452-479
0.003
1
DPH6-AS1
hsa-miR-1248
0.919
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
930-957
0.039
6
6mer
1306-1318
0.006
2
6mer
368-383
0.005
1
bP-21264C1.2
hsa-miR-1248
0.916
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624052
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-109
0.027
0
7mer
68-88
0.023
0
RP11-730K11.1
hsa-miR-1248
0.916
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2691-2701
0.024
4
7mer
556-571
0.011
1
7mer
2484-2510
0.010
1
7mer
289-306
0.005
0
FAM95B1
hsa-miR-1248
0.915
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610473
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-82
0.045
0
7mer
97-124
0.005
Not Conserved
MIR4534
hsa-miR-1248
0.914
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
54312-54338
0.005
3
7mer
51439-51463
0.004
1
8mer
52115-52129
0.004
2
7mer
36263-36285
0.003
8
6mer
20518-20542
0.003
5
6mer
50299-50320
0.002
8
6mer
25251-25273
0.002
10
6mer
54264-54289
0.002
1
6mer
7331-7355
0.002
1
6mer
26992-27012
0.002
2
6mer
6617-6637
0.002
0
6mer
14635-14659
0.002
1
6mer
52733-52753
0.002
1
6mer
31586-31598
0.002
4
6mer
23754-23771
0.001
Not Conserved
6mer
9022-9040
0.001
0
6mer
27129-27155
0.001
2
6mer
39197-39223
0.001
1
6mer
44456-44482
0.001
1
6mer
38227-38244
0.001
1
6mer
25838-25858
0.001
0
6mer
20820-20846
0.001
0
6mer
24849-24876
0.001
2
6mer
40559-40584
0.001
1
6mer
44704-44718
0.001
0
6mer
33520-33538
0.001
1
XLOC_013652
hsa-miR-1248
0.914
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028317
Biotype: transcript isomorph
Gene id: XLOC_013652
Gene Name: XLOC_013652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-321
0.013
1
6mer
12-23
0.007
1
7mer
289-308
0.006
0
6mer
223-245
0.005
0
6mer
274-293
0.005
1
6mer
209-227
0.005
0
6mer
241-257
0.004
1
6mer
280-302
0.004
1
RP11-403B2.6
hsa-miR-1248
0.913
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559621
Biotype: lincRNA
Gene id: ENSG00000259383
Gene Name: RP11-403B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-656
0.049
0
TSNAX-DISC1
hsa-miR-1248
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028400.1
Biotype: sense
Gene id: NR_028400.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-174
0.025
8
8mer
2295-2319
0.010
1
6mer
214-234
0.008
8
6mer
2147-2168
0.003
2
6mer
1491-1510
0.003
7
RP5-991O23.1
hsa-miR-1248
0.912
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517807
Biotype: lincRNA
Gene id: ENSG00000253510
Gene Name: RP5-991O23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
726-745
0.023
1
7mer
122-144
0.009
Not Conserved
6mer
2962-2978
0.007
1
6mer
81-98
0.006
1
6mer
2055-2078
0.003
1
6mer
1773-1789
0.001
Not Conserved
XLOC_002380
hsa-miR-1248
0.911
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005266
Biotype: transcript isomorph
Gene id: XLOC_002380
Gene Name: XLOC_002380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-198
0.049
6
XLOC_010490
hsa-miR-1248
0.910
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021896
Biotype: transcript isomorph
Gene id: XLOC_010490
Gene Name: XLOC_010490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1209-1232
0.030
3
8mer
1254-1271
0.010
0
9mer
1236-1259
0.008
Not Conserved
RP1-104O17.1
hsa-miR-1248
0.910
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433637
Biotype: lincRNA
Gene id: ENSG00000224849
Gene Name: RP1-104O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-146
0.048
9
RP11-204N11.1
hsa-miR-1248
0.909
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2945-2964
0.024
2
8mer
3014-3036
0.016
1
7mer
2478-2504
0.009
2
RP11-526A4.1
hsa-miR-1248
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-133
0.020
1
7mer
74-98
0.011
1
9mer
398-414
0.010
0
6mer
182-200
0.004
2
6mer
1504-1523
0.003
1
AC091153.4
hsa-miR-1248
0.907
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000441700
Biotype: antisense
Gene id: ENSG00000235085
Gene Name: AC091153.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-167
0.019
4
7mer
357-375
0.016
1
7mer
206-227
0.006
0
6mer
304-321
0.004
0
6mer
175-200
0.003
0
KCTD21-AS1
hsa-miR-1248
0.907
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527321
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-367
0.036
1
7mer
355-376
0.008
1
6mer
444-461
0.003
1
XLOC_013795
hsa-miR-1248
0.906
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028704
Biotype: transcript isomorph
Gene id: XLOC_013795
Gene Name: XLOC_013795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2553-2574
0.020
7
6mer
201-219
0.006
1
6mer
2092-2109
0.001
0
6mer
913-935
0.001
1
6mer
1912-1939
0.001
0
6mer
963-984
0.001
0
6mer
2032-2059
0.001
0
6mer
1772-1799
0.001
1
6mer
2002-2029
0.001
0
6mer
2062-2089
0.001
0
6mer
1942-1969
0.001
0
6mer
1972-1989
0.001
0
6mer
1143-1170
0.001
0
6mer
1083-1110
0.001
0
6mer
1712-1739
0.001
Not Conserved
6mer
1502-1529
0.001
1
6mer
1862-1879
0.001
0
6mer
1113-1134
0.001
0
6mer
1802-1819
0.001
0
6mer
1832-1859
0.001
0
6mer
1232-1253
0.001
0
6mer
1592-1619
0.001
0
6mer
1292-1319
0.001
0
6mer
1262-1279
0.001
0
6mer
1412-1429
0.001
0
6mer
1622-1649
0.000
0
6mer
1532-1549
0.000
0
6mer
1682-1699
0.000
0
6mer
1652-1679
0.000
0
6mer
1352-1379
0.000
Not Conserved
6mer
1322-1349
0.000
Not Conserved
6mer
1562-1589
0.000
0
6mer
1442-1469
0.000
0
6mer
1472-1499
0.000
0
6mer
1382-1399
0.000
Not Conserved
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