LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
RP11-481J2.2
hsa-miR-1248
0.962
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562322
Biotype: lincRNA
Gene id: ENSG00000260186
Gene Name: RP11-481J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-30
0.064
1
XLOC_006777
hsa-miR-1248
0.960
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015275
Biotype: transcript isomorph
Gene id: XLOC_006777
Gene Name: XLOC_006777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-206
0.062
1
FAM157A
hsa-miR-1248
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-78
0.062
0
XLOC_006976
hsa-miR-1248
0.958
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2450-2470
0.062
1
AC114776.3
hsa-miR-1248
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
609-620
0.029
1
6mer
3187-3211
0.006
1
8mer
2357-2376
0.006
0
6mer
3769-3788
0.006
0
6mer
2721-2732
0.005
1
6mer
3633-3656
0.005
0
6mer
1611-1637
0.003
0
6mer
2713-2732
0.002
1
LCMT1-AS2
hsa-miR-1248
0.952
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
919-942
0.033
1
6mer
725-747
0.014
1
7mer
858-871
0.008
0
6mer
1845-1867
0.004
0
MIR181A1HG
hsa-miR-1248
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-111
0.038
5
7mer
12-36
0.020
1
6mer
809-827
0.001
0
XLOC_003864
hsa-miR-1248
0.948
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008413
Biotype: transcript isomorph
Gene id: XLOC_003864
Gene Name: XLOC_003864
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-752
0.029
1
7mer
646-666
0.025
2
6mer
492-512
0.004
3
XLOC_012370
hsa-miR-1248
0.948
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-460
0.028
0
6mer
741-752
0.018
0
6mer
311-326
0.012
0
CTA-221G9.11
hsa-miR-1248
0.948
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
965-986
0.058
0
XLOC_009308
hsa-miR-1248
0.947
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019510
Biotype: transcript isomorph
Gene id: XLOC_009308
Gene Name: XLOC_009308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-48
0.022
1
6mer
245-268
0.016
1
6mer
133-158
0.013
1
6mer
435-458
0.007
0
RP11-1070N10.7
hsa-miR-1248
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602953
Biotype: lincRNA
Gene id: ENSG00000270038
Gene Name: RP11-1070N10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-510
0.033
1
8mer
597-618
0.025
0
XLOC_007486
hsa-miR-1248
0.944
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2509-2529
0.050
9
6mer
2444-2468
0.007
6
RP11-157B13.7
hsa-miR-1248
0.942
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599810
Biotype: lincRNA
Gene id: ENSG00000267872
Gene Name: RP11-157B13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-171
0.056
0
RP11-250B2.3
hsa-miR-1248
0.942
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443221
Biotype: lincRNA
Gene id: ENSG00000233967
Gene Name: RP11-250B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-377
0.037
7
7mer
112-129
0.019
1
LINC01088
hsa-miR-1248
0.942
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507761
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-31
0.034
1
7mer
450-468
0.022
1
XLOC_000210
hsa-miR-1248
0.941
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000952
Biotype: transcript isomorph
Gene id: XLOC_000210
Gene Name: XLOC_000210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-224
0.056
5
RP11-112L7.1
hsa-miR-1248
0.941
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564402
Biotype: lincRNA
Gene id: ENSG00000260786
Gene Name: RP11-112L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-153
0.016
1
7mer
2296-2321
0.016
4
7mer
330-346
0.012
1
6mer
527-547
0.005
2
6mer
2173-2198
0.005
3
6mer
1004-1027
0.002
0
XLOC_010860
hsa-miR-1248
0.940
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022543
Biotype: transcript isomorph
Gene id: XLOC_010860
Gene Name: XLOC_010860
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-162
0.018
1
7mer
1305-1327
0.014
0
7mer
171-195
0.008
0
7mer
676-695
0.006
1
6mer
1339-1360
0.006
1
6mer
358-383
0.004
1
RP11-292D4.3
hsa-miR-1248
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565538
Biotype: lincRNA
Gene id: ENSG00000260090
Gene Name: RP11-292D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-281
0.015
2
8mer
359-386
0.012
2
8mer
1009-1022
0.009
0
7mer
2311-2330
0.008
0
7mer
439-463
0.006
0
7mer
582-608
0.006
0
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