LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-1248


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_003973
hsa-miR-1248
0.981
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008501
Biotype: transcript isomorph
Gene id: XLOC_003973
Gene Name: XLOC_003973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-486
0.052
0
6mer
162-181
0.024
0
XLOC_001621
hsa-miR-1248
0.978
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-218
0.055
1
6mer
542-562
0.018
1
XLOC_014244
hsa-miR-1248
0.976
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029809
Biotype: transcript isomorph
Gene id: XLOC_014244
Gene Name: XLOC_014244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1285-1290
0.041
1
7mer
956-976
0.018
0
6mer
1286-1300
0.012
1
RP11-456O19.4
hsa-miR-1248
0.975
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587904
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-147
0.066
10
6mer
742-767
0.005
3
RP1-34H18.1
hsa-miR-1248
0.974
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550042
Biotype: lincRNA
Gene id: ENSG00000231121
Gene Name: RP1-34H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
959-983
0.063
9
6mer
695-714
0.007
6
RP11-456O19.4
hsa-miR-1248
0.972
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591974
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-153
0.062
10
6mer
748-773
0.004
3
6mer
973-999
0.002
0
LINC01133
hsa-miR-1248
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443364
Biotype: lincRNA
Gene id: ENSG00000224259
Gene Name: LINC01133
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-595
0.021
0
7mer
647-665
0.017
Not Conserved
7mer
661-681
0.016
Not Conserved
7mer
653-673
0.015
Not Conserved
SPACA6P
hsa-miR-1248
0.972
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000571328
Biotype: retained_intron
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-416
0.051
3
8mer
376-394
0.018
1
XLOC_012852
hsa-miR-1248
0.971
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026210
Biotype: transcript isomorph
Gene id: XLOC_012852
Gene Name: XLOC_012852
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-153
0.062
10
6mer
748-773
0.004
3
6mer
973-999
0.002
0
XLOC_012131
hsa-miR-1248
0.971
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025324
Biotype: transcript isomorph
Gene id: XLOC_012131
Gene Name: XLOC_012131
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
566-582
0.063
0
7mer
432-458
0.005
Not Conserved
DGCR5
hsa-miR-1248
0.970
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-393
0.068
0
LOC100190986
hsa-miR-1248
0.968
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1855-1874
0.041
0
7mer
1552-1572
0.021
0
6mer
1494-1517
0.004
0
XLOC_006324
hsa-miR-1248
0.967
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-626
0.066
0
CTC-265F19.1
hsa-miR-1248
0.966
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1746-1772
0.012
1
6mer
1492-1518
0.009
1
6mer
1682-1705
0.009
1
6mer
1555-1578
0.007
1
6mer
1301-1323
0.006
1
6mer
1365-1385
0.006
1
6mer
1428-1450
0.005
1
6mer
1810-1826
0.004
0
6mer
1619-1645
0.003
0
7mer
1111-1134
0.002
0
6mer
1173-1195
0.002
0
6mer
1052-1074
0.000
Not Conserved
RP11-171I2.1
hsa-miR-1248
0.965
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3465-3480
0.030
1
7mer
730-749
0.019
5
6mer
170-180
0.011
8
6mer
3161-3185
0.005
1
RP5-899B16.2
hsa-miR-1248
0.965
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445585
Biotype: lincRNA
Gene id: ENSG00000225148
Gene Name: RP5-899B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-135
0.052
6
8mer
756-774
0.013
1
XLOC_004128
hsa-miR-1248
0.965
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007884
Biotype: transcript isomorph
Gene id: XLOC_004128
Gene Name: XLOC_004128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-215
0.065
0
XLOC_011240
hsa-miR-1248
0.964
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023261
Biotype: transcript isomorph
Gene id: XLOC_011240
Gene Name: XLOC_011240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-57
0.025
1
7mer
2289-2315
0.011
1
8mer
562-583
0.010
0
7mer
1786-1812
0.010
0
6mer
218-237
0.005
1
6mer
502-521
0.004
1
LOC101926935
hsa-miR-1248
0.964
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5103-5128
0.025
0
7mer
6120-6142
0.021
0
6mer
5274-5301
0.009
0
6mer
2332-2356
0.005
0
7mer
1717-1738
0.004
Not Conserved
9mer
1535-1558
0.001
Not Conserved
XLOC_005972
hsa-miR-1248
0.964
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2599-2619
0.021
1
8mer
134-161
0.017
0
6mer
11-29
0.011
3
6mer
28-54
0.004
0
6mer
968-993
0.003
1
7mer
126-148
0.003
0
6mer
2054-2081
0.002
0
6mer
775-797
0.002
Not Conserved
6mer
992-1014
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept