LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1248


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Gene
miRNA
Score
DIANA Links
XLOC_008528
hsa-miR-1248
0.865
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-188
0.025
1
7mer
3166-3190
0.016
1
RP11-561B11.3
hsa-miR-1248
0.864
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555024
Biotype: lincRNA
Gene id: ENSG00000258860
Gene Name: RP11-561B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-62
0.013
2
7mer
58-63
0.013
1
7mer
327-346
0.011
1
6mer
426-448
0.004
3
XLOC_004419
hsa-miR-1248
0.864
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010710
Biotype: transcript isomorph
Gene id: XLOC_004419
Gene Name: XLOC_004419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1403-1417
0.018
0
7mer
1295-1318
0.015
0
7mer
1534-1556
0.008
0
XLOC_009367
hsa-miR-1248
0.864
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019117
Biotype: transcript isomorph
Gene id: XLOC_009367
Gene Name: XLOC_009367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1341-1367
0.023
0
7mer
1311-1335
0.018
1
CASC23
hsa-miR-1248
0.863
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534076
Biotype: antisense
Gene id: ENSG00000255420
Gene Name: CASC23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1311-1337
0.023
0
7mer
1281-1305
0.018
1
HLA-F-AS1
hsa-miR-1248
0.862
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399247
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-541
0.026
5
8mer
461-486
0.011
2
6mer
1454-1479
0.004
1
MGC15885
hsa-miR-1248
0.861
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558940
Biotype: antisense
Gene id: ENSG00000259458
Gene Name: MGC15885
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-38
0.013
7
7mer
306-312
0.012
3
8mer
162-185
0.011
1
6mer
1880-1895
0.005
2
RP11-545A16.4
hsa-miR-1248
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567150
Biotype: sense_overlapping
Gene id: ENSG00000261060
Gene Name: RP11-545A16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
672-698
0.019
1
7mer
160-177
0.017
1
6mer
540-564
0.003
1
HAGLR
hsa-miR-1248
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456876
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-230
0.031
6
6mer
63-84
0.010
5
LINC01435
hsa-miR-1248
0.858
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597243
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-198
0.021
1
7mer
436-459
0.008
1
6mer
354-378
0.007
3
6mer
649-666
0.005
2
HAGLR
hsa-miR-1248
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000552156
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-227
0.029
6
6mer
63-84
0.011
5
TSNAX-DISC1
hsa-miR-1248
0.858
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028395.1
Biotype: sense
Gene id: NR_028395.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-174
0.025
8
6mer
214-234
0.008
8
6mer
2590-2604
0.003
3
6mer
2295-2312
0.002
2
6mer
1512-1531
0.002
7
RP11-613D13.5
hsa-miR-1248
0.858
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499066
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1633-1648
0.027
3
7mer
1179-1193
0.009
2
6mer
378-399
0.004
1
TSNAX-DISC1
hsa-miR-1248
0.857
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028397.1
Biotype: sense
Gene id: NR_028397.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-174
0.025
8
6mer
214-234
0.008
8
6mer
1249-1268
0.003
7
6mer
2430-2444
0.002
3
6mer
2032-2049
0.002
2
THTPA
hsa-miR-1248
0.857
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556613
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-53
0.023
5
7mer
303-328
0.017
4
XLOC_009299
hsa-miR-1248
0.857
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019498
Biotype: transcript isomorph
Gene id: XLOC_009299
Gene Name: XLOC_009299
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1505-1516
0.020
4
6mer
865-886
0.004
1
6mer
589-607
0.004
3
6mer
1163-1187
0.003
1
6mer
1029-1046
0.003
2
6mer
1041-1064
0.003
1
6mer
704-716
0.002
1
CTA-246H3.12
hsa-miR-1248
0.857
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-318
0.022
0
6mer
463-487
0.018
0
AC098872.3
hsa-miR-1248
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413304
Biotype: antisense
Gene id: ENSG00000225884
Gene Name: AC098872.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-467
0.040
0
XLOC_007407
hsa-miR-1248
0.856
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016621
Biotype: transcript isomorph
Gene id: XLOC_007407
Gene Name: XLOC_007407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-81
0.040
2
RP11-734K23.9
hsa-miR-1248
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622367
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1248
Sequence: accuucuuguauaagcacugugcuaaa
MirBase ID: MIMAT0005900
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-116
0.024
1
6mer
68-84
0.008
1
6mer
140-156
0.008
0
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