LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
LINC01237
hsa-miR-124-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457686
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
323-348
0.019
1
6mer
430-450
0.016
1
6mer
543-562
0.006
0
AP001042.1
hsa-miR-124-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416842
Biotype: lincRNA
Gene id: ENSG00000229986
Gene Name: AP001042.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-217
0.041
1
XLOC_004871
hsa-miR-124-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010369
Biotype: transcript isomorph
Gene id: XLOC_004871
Gene Name: XLOC_004871
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-50
0.041
5
LINC01122
hsa-miR-124-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427421
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-37
0.041
9
HNRNPUL2-BSCL2
hsa-miR-124-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2230-2248
0.035
10
7mer
1274-1283
0.006
5
RP11-506B6.6
hsa-miR-124-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585450
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-702
0.024
2
7mer
609-623
0.016
1
TMEM147-AS1
hsa-miR-124-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590717
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-49
0.037
1
7mer
2326-2346
0.002
0
6mer
621-643
0.002
1
RP1-309I22.2
hsa-miR-124-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7719-7745
0.005
3
7mer
7163-7172
0.004
1
7mer
4128-4145
0.003
1
6mer
22485-22499
0.003
8
6mer
23942-23960
0.003
6
7mer
13730-13749
0.003
1
7mer
1719-1738
0.002
1
7mer
16480-16505
0.002
Not Conserved
6mer
28068-28087
0.002
1
6mer
23432-23448
0.002
3
6mer
21619-21639
0.002
4
6mer
6776-6794
0.001
2
6mer
26510-26527
0.001
2
6mer
26337-26356
0.001
2
6mer
15062-15080
0.001
0
6mer
8254-8275
0.001
1
6mer
9661-9679
0.001
3
6mer
10350-10366
0.001
1
6mer
11241-11256
0.001
1
6mer
13010-13025
0.001
0
6mer
4179-4202
0.001
1
6mer
7736-7754
0.001
2
6mer
24025-24045
0.000
0
LINC00656
hsa-miR-124-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443744
Biotype: lincRNA
Gene id: ENSG00000233746
Gene Name: LINC00656
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-339
0.040
1
XLOC_002602
hsa-miR-124-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005970
Biotype: transcript isomorph
Gene id: XLOC_002602
Gene Name: XLOC_002602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1244-1265
0.040
11
XLOC_002244
hsa-miR-124-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004364
Biotype: transcript isomorph
Gene id: XLOC_002244
Gene Name: XLOC_002244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-474
0.025
8
6mer
363-386
0.005
5
6mer
594-611
0.004
3
6mer
826-853
0.003
0
6mer
766-780
0.003
4
MAPKAPK5-AS1
hsa-miR-124-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590479
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-69
0.040
1
XLOC_004842
hsa-miR-124-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009279
Biotype: transcript isomorph
Gene id: XLOC_004842
Gene Name: XLOC_004842
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
921-945
0.040
8
XLOC_013708
hsa-miR-124-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-41
0.017
0
6mer
829-837
0.012
0
6mer
1289-1310
0.011
0
LOC100507205
hsa-miR-124-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038309.1
Biotype: lincRNA
Gene id: NR_038309.1 (gene)
Gene Name: LOC100507205
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-304
0.040
2
RP13-638C3.4
hsa-miR-124-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576912
Biotype: antisense
Gene id: ENSG00000261845
Gene Name: RP13-638C3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-978
0.040
2
PWRN2
hsa-miR-124-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566245
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-423
0.040
1
STXBP5-AS1
hsa-miR-124-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606831
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-738
0.030
1
7mer
434-445
0.005
1
7mer
1155-1181
0.005
0
AC079779.7
hsa-miR-124-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437798
Biotype: antisense
Gene id: ENSG00000227061
Gene Name: AC079779.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4447-4462
0.005
3
6mer
34-55
0.003
0
6mer
137-159
0.003
0
6mer
85-107
0.003
0
6mer
189-211
0.003
0
6mer
293-315
0.002
0
6mer
345-367
0.002
0
6mer
241-263
0.002
0
6mer
397-419
0.002
0
6mer
449-471
0.002
0
6mer
501-523
0.002
Not Conserved
6mer
657-679
0.002
0
6mer
553-575
0.001
0
6mer
605-627
0.001
0
6mer
709-731
0.001
0
6mer
761-783
0.001
0
6mer
865-887
0.001
0
6mer
917-939
0.001
0
6mer
813-835
0.001
Not Conserved
LINC00861
hsa-miR-124-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5105-5128
0.012
1
7mer
4678-4699
0.009
1
7mer
437-453
0.008
0
7mer
389-405
0.007
0
6mer
722-731
0.003
0
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