LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
RP11-13P5.2
hsa-miR-124-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419064
Biotype: antisense
Gene id: ENSG00000233682
Gene Name: RP11-13P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-39
0.027
1
7mer
2-15
0.017
0
RP11-17A4.3
hsa-miR-124-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523724
Biotype: lincRNA
Gene id: ENSG00000253139
Gene Name: RP11-17A4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-59
0.044
0
TMEM44-AS1
hsa-miR-124-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047573.1
Biotype: antisense
Gene id: NR_047573.1 (gene)
Gene Name: TMEM44-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-167
0.044
1
XLOC_011448
hsa-miR-124-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9761-9777
0.029
2
6mer
10185-10209
0.009
7
7mer
1150-1173
0.003
1
6mer
4610-4636
0.002
1
6mer
2466-2482
0.001
0
TPTEP1
hsa-miR-124-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000400593
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
846-871
0.030
1
6mer
1079-1103
0.009
1
6mer
1179-1195
0.005
0
PWRN1
hsa-miR-124-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-39
0.044
1
XLOC_000650
hsa-miR-124-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001363
Biotype: transcript isomorph
Gene id: XLOC_000650
Gene Name: XLOC_000650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-506
0.043
1
LL22NC03-22D1.1
hsa-miR-124-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13703-13713
0.007
0
7mer
26735-26756
0.005
1
7mer
27579-27596
0.005
0
7mer
23450-23468
0.004
1
7mer
6251-6274
0.003
1
7mer
13746-13769
0.003
0
6mer
593-615
0.003
1
6mer
2471-2489
0.002
4
6mer
19750-19765
0.002
1
6mer
10322-10343
0.002
0
6mer
16257-16282
0.002
0
6mer
20169-20183
0.002
0
6mer
1124-1145
0.001
0
6mer
25358-25382
0.001
0
6mer
5940-5962
0.001
2
6mer
26600-26613
0.001
0
XLOC_001097
hsa-miR-124-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002518
Biotype: transcript isomorph
Gene id: XLOC_001097
Gene Name: XLOC_001097
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-126
0.043
0
TTN-AS1
hsa-miR-124-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4416-4429
0.018
4
7mer
4224-4244
0.015
9
6mer
283-303
0.006
9
6mer
2248-2267
0.002
7
6mer
4130-4145
0.002
1
RP11-206L10.2
hsa-miR-124-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428504
Biotype: lincRNA
Gene id: ENSG00000228327
Gene Name: RP11-206L10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-197
0.043
1
XLOC_006073
hsa-miR-124-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014122
Biotype: transcript isomorph
Gene id: XLOC_006073
Gene Name: XLOC_006073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
821-833
0.020
1
7mer
549-571
0.018
1
7mer
693-710
0.006
0
LCMT1-AS2
hsa-miR-124-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-924
0.019
1
6mer
260-271
0.010
1
6mer
288-296
0.009
0
6mer
3417-3440
0.003
0
6mer
3719-3745
0.002
0
CTD-2349P21.10
hsa-miR-124-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585212
Biotype: sense_intronic
Gene id: ENSG00000265791
Gene Name: CTD-2349P21.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-260
0.043
0
RP11-227G15.3
hsa-miR-124-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581915
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-53
0.043
11
RP11-634B7.4
hsa-miR-124-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-176
0.043
1
RP11-150D5.2
hsa-miR-124-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568714
Biotype: lincRNA
Gene id: ENSG00000260983
Gene Name: RP11-150D5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-650
0.042
1
MAGI2-AS1
hsa-miR-124-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428298
Biotype: antisense
Gene id: ENSG00000251276
Gene Name: MAGI2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-429
0.042
1
RP11-310E22.4
hsa-miR-124-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451737
Biotype: antisense
Gene id: ENSG00000234026
Gene Name: RP11-310E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-28
0.042
1
RP11-556G22.2
hsa-miR-124-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511835
Biotype: antisense
Gene id: ENSG00000248343
Gene Name: RP11-556G22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-110
0.037
9
6mer
518-533
0.004
0
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