LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
PCBP1-AS1
hsa-miR-124-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599427
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-157
0.042
0
6mer
272-291
0.004
0
DKFZp686K1684
hsa-miR-124-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033971.1
Biotype: sense
Gene id: NR_033971.1 (gene)
Gene Name: DKFZp686K1684
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1360-1385
0.042
1
6mer
78-96
0.004
2
RP11-122K13.12
hsa-miR-124-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424450
Biotype: antisense
Gene id: ENSG00000235245
Gene Name: RP11-122K13.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-427
0.033
1
6mer
236-260
0.013
1
RP11-632K5.2
hsa-miR-124-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524441
Biotype: sense_intronic
Gene id: ENSG00000255440
Gene Name: RP11-632K5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-340
0.046
3
RP5-1014D13.2
hsa-miR-124-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18785-18800
0.037
4
6mer
248-270
0.002
1
7mer
8566-8576
0.002
1
6mer
17439-17466
0.001
1
6mer
3562-3577
0.001
Not Conserved
6mer
18358-18374
0.001
1
6mer
12820-12843
0.001
1
6mer
16445-16460
0.001
0
AP000997.2
hsa-miR-124-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-361
0.029
0
7mer
1311-1322
0.008
0
6mer
7522-7543
0.004
7
6mer
1633-1649
0.002
1
6mer
2866-2887
0.002
1
6mer
3038-3050
0.002
1
RP11-309H21.3
hsa-miR-124-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-104
0.016
0
6mer
80-96
0.012
0
6mer
688-701
0.011
0
6mer
1023-1039
0.006
0
PTPRG-AS1
hsa-miR-124-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466893
Biotype: antisense
Gene id: ENSG00000241472
Gene Name: PTPRG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-522
0.023
5
7mer
14-38
0.022
4
LINC01226
hsa-miR-124-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417514
Biotype: lincRNA
Gene id: ENSG00000223907
Gene Name: LINC01226
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-88
0.046
1
LINC01128
hsa-miR-124-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000622921
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-466
0.045
0
LL22NC03-86G7.1
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35633-35656
0.005
1
7mer
33290-33308
0.004
0
7mer
7269-7289
0.004
1
7mer
26961-26980
0.003
1
7mer
9265-9292
0.003
0
8mer
35637-35663
0.003
Not Conserved
6mer
31007-31017
0.002
2
6mer
2691-2712
0.002
2
6mer
15374-15391
0.002
1
6mer
20845-20863
0.002
1
6mer
23777-23802
0.001
1
6mer
10291-10318
0.001
0
6mer
13579-13600
0.001
2
6mer
32637-32654
0.001
1
6mer
2217-2241
0.001
1
6mer
12074-12095
0.001
1
6mer
3330-3348
0.001
1
6mer
34443-34459
0.001
0
6mer
29134-29155
0.001
1
6mer
30800-30810
0.001
1
6mer
17414-17435
0.001
3
6mer
35176-35201
0.001
0
6mer
20690-20707
0.001
1
6mer
7399-7422
0.001
0
DKFZP434L187
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000455163
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-329
0.045
1
RP11-400F19.18
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591237
Biotype: sense_intronic
Gene id: ENSG00000267632
Gene Name: RP11-400F19.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1137-1156
0.039
2
6mer
521-532
0.006
5
RP11-383J24.6
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1748-1772
0.023
1
7mer
1658-1675
0.015
1
6mer
2060-2083
0.007
1
AC114763.1
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412593
Biotype: lincRNA
Gene id: ENSG00000230569
Gene Name: AC114763.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-341
0.045
1
RP11-283C24.1
hsa-miR-124-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578585
Biotype: lincRNA
Gene id: ENSG00000264215
Gene Name: RP11-283C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-599
0.031
0
6mer
280-296
0.007
0
6mer
1374-1389
0.007
0
TPTEP1
hsa-miR-124-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000383140
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-443
0.033
1
6mer
619-643
0.008
1
6mer
719-735
0.004
0
TMEM44-AS1
hsa-miR-124-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047574.1
Biotype: antisense
Gene id: NR_047574.1 (gene)
Gene Name: TMEM44-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-167
0.045
1
XLOC_009887
hsa-miR-124-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020568
Biotype: transcript isomorph
Gene id: XLOC_009887
Gene Name: XLOC_009887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-247
0.037
0
6mer
604-620
0.006
1
6mer
624-634
0.002
0
RP11-71H17.7
hsa-miR-124-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568966
Biotype: sense_overlapping
Gene id: ENSG00000260391
Gene Name: RP11-71H17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2253-2274
0.027
9
6mer
2221-2244
0.011
10
6mer
2070-2091
0.007
5
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