LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
RP11-423P10.2
hsa-miR-124-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606229
Biotype: sense_intronic
Gene id: ENSG00000272054
Gene Name: RP11-423P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3650-3670
0.049
Not Conserved
RP11-354O24.1
hsa-miR-124-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505511
Biotype: lincRNA
Gene id: ENSG00000249052
Gene Name: RP11-354O24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-201
0.048
1
AC091729.8
hsa-miR-124-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415656
Biotype: antisense
Gene id: ENSG00000226291
Gene Name: AC091729.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-280
0.040
1
6mer
37-55
0.008
1
LINC00376
hsa-miR-124-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000439454
Biotype: lincRNA
Gene id: ENSG00000227564
Gene Name: LINC00376
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-145
0.048
1
RP11-508N22.12
hsa-miR-124-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1488-1506
0.020
Not Conserved
7mer
3835-3852
0.009
0
7mer
909-935
0.008
1
6mer
800-821
0.005
1
7mer
3989-4014
0.003
0
6mer
5267-5286
0.003
0
ERVK13-1
hsa-miR-124-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000619862
Biotype: retained_intron
Gene id: ENSG00000260565
Gene Name: ERVK13-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9-23
0.020
0
7mer
3982-4000
0.011
Not Conserved
6mer
335-355
0.004
Not Conserved
6mer
95-121
0.003
Not Conserved
6mer
303-317
0.003
Not Conserved
7mer
3492-3509
0.003
Not Conserved
6mer
2755-2776
0.002
Not Conserved
6mer
1306-1322
0.001
Not Conserved
RAD51L3-RFFL
hsa-miR-124-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2829-2854
0.038
9
6mer
555-575
0.004
3
6mer
662-681
0.003
6
7mer
1542-1557
0.002
0
AL022344.7
hsa-miR-124-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568976
Biotype: lincRNA
Gene id: ENSG00000259869
Gene Name: AL022344.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-144
0.047
0
TTTY15
hsa-miR-124-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-170
0.017
0
6mer
279-295
0.015
0
6mer
550-576
0.015
0
U91328.19
hsa-miR-124-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606723
Biotype: lincRNA
Gene id: ENSG00000272462
Gene Name: U91328.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3933-3951
0.019
1
7mer
3343-3361
0.016
1
7mer
1410-1432
0.007
1
7mer
2142-2166
0.003
0
6mer
1678-1690
0.002
0
6mer
1105-1131
0.001
0
PHKA1-AS1
hsa-miR-124-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420998
Biotype: antisense
Gene id: ENSG00000231944
Gene Name: PHKA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-461
0.047
1
RP1-37N7.1
hsa-miR-124-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579352
Biotype: antisense
Gene id: ENSG00000264177
Gene Name: RP1-37N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-261
0.022
0
7mer
4-15
0.012
0
7mer
4070-4096
0.006
Not Conserved
6mer
261-280
0.002
Not Conserved
7mer
2138-2159
0.001
Not Conserved
6mer
2385-2399
0.001
Not Conserved
6mer
2965-2980
0.001
0
RP11-81F13.2
hsa-miR-124-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557642
Biotype: antisense
Gene id: ENSG00000258601
Gene Name: RP11-81F13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-491
0.047
1
LOC90834
hsa-miR-124-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_026993.1
Biotype: sense
Gene id: NR_026993.1 (gene)
Gene Name: LOC90834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
608-629
0.020
1
7mer
1649-1666
0.011
1
6mer
2383-2391
0.006
1
6mer
221-245
0.006
1
6mer
1916-1929
0.003
1
XLOC_013844
hsa-miR-124-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028471
Biotype: transcript isomorph
Gene id: XLOC_013844
Gene Name: XLOC_013844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-84
0.047
6
RP11-31H5.3
hsa-miR-124-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000614966
Biotype: sense_intronic
Gene id: ENSG00000274667
Gene Name: RP11-31H5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-289
0.047
0
AF003625.3
hsa-miR-124-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602313
Biotype: lincRNA
Gene id: ENSG00000269993
Gene Name: AF003625.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
403-417
0.046
7
RP11-227G15.3
hsa-miR-124-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578389
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-80
0.046
1
XLOC_009412
hsa-miR-124-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019611
Biotype: transcript isomorph
Gene id: XLOC_009412
Gene Name: XLOC_009412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-44
0.046
Not Conserved
XLOC_005208
hsa-miR-124-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4202-4220
0.016
1
7mer
3612-3630
0.014
1
7mer
1679-1701
0.006
1
6mer
492-512
0.005
1
7mer
2411-2435
0.003
0
6mer
1947-1959
0.002
0
6mer
1374-1400
0.001
0
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