LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
KB-1183D5.18
hsa-miR-124-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624642
Biotype: lincRNA
Gene id: ENSG00000279920
Gene Name: KB-1183D5.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-87
0.042
0
7mer
64-75
0.013
Not Conserved
RP11-277K23.1
hsa-miR-124-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529017
Biotype: lincRNA
Gene id: ENSG00000255175
Gene Name: RP11-277K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-29
0.055
0
TPTEP1
hsa-miR-124-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-120
0.049
1
6mer
1186-1211
0.007
0
AC096558.1
hsa-miR-124-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442794
Biotype: antisense
Gene id: ENSG00000228655
Gene Name: AC096558.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-449
0.055
1
RP11-722M1.1
hsa-miR-124-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515128
Biotype: lincRNA
Gene id: ENSG00000248215
Gene Name: RP11-722M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-35
0.053
1
TPTEP1
hsa-miR-124-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000585784
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-191
0.053
1
STXBP5-AS1
hsa-miR-124-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427394
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-73
0.046
1
6mer
1565-1586
0.004
0
6mer
613-639
0.002
1
XLOC_008669
hsa-miR-124-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018389
Biotype: transcript isomorph
Gene id: XLOC_008669
Gene Name: XLOC_008669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-460
0.052
1
XLOC_008223
hsa-miR-124-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017539
Biotype: transcript isomorph
Gene id: XLOC_008223
Gene Name: XLOC_008223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-26
0.052
0
XLOC_004313
hsa-miR-124-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009902
Biotype: transcript isomorph
Gene id: XLOC_004313
Gene Name: XLOC_004313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-158
0.052
1
XLOC_005117
hsa-miR-124-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011630
Biotype: transcript isomorph
Gene id: XLOC_005117
Gene Name: XLOC_005117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3056-3078
0.052
1
CTB-92J24.2
hsa-miR-124-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1400-1411
0.051
0
AC096558.1
hsa-miR-124-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000549032
Biotype: antisense
Gene id: ENSG00000228655
Gene Name: AC096558.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-307
0.051
1
MIR4534
hsa-miR-124-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9363-9386
0.007
1
7mer
18487-18506
0.003
1
7mer
8722-8747
0.002
1
6mer
33916-33938
0.002
3
6mer
19647-19666
0.002
7
6mer
41084-41101
0.002
1
6mer
25762-25788
0.002
7
6mer
8255-8267
0.002
0
6mer
10534-10544
0.002
2
6mer
8561-8577
0.002
1
7mer
1678-1700
0.002
0
6mer
10245-10261
0.002
2
6mer
21041-21053
0.001
2
6mer
21295-21311
0.001
2
6mer
10056-10078
0.001
1
6mer
32974-33000
0.001
1
6mer
38271-38290
0.001
1
6mer
26703-26718
0.001
3
6mer
38774-38794
0.001
Not Conserved
6mer
24523-24549
0.001
1
6mer
20045-20064
0.001
0
6mer
43347-43361
0.001
3
6mer
30357-30372
0.001
1
6mer
20349-20371
0.001
Not Conserved
6mer
19047-19067
0.001
1
6mer
40796-40814
0.001
0
6mer
3204-3221
0.001
1
6mer
12737-12749
0.001
Not Conserved
6mer
18143-18163
0.001
0
6mer
31330-31355
0.001
Not Conserved
6mer
43459-43479
0.001
1
6mer
16457-16473
0.001
0
6mer
30661-30677
0.001
Not Conserved
6mer
3266-3286
0.000
0
XLOC_004474
hsa-miR-124-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010040
Biotype: transcript isomorph
Gene id: XLOC_004474
Gene Name: XLOC_004474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-46
0.039
8
6mer
7-31
0.011
8
TSIX
hsa-miR-124-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32186-32202
0.009
1
7mer
31542-31558
0.007
2
7mer
22375-22395
0.006
3
7mer
22967-22981
0.004
1
7mer
32226-32236
0.004
2
7mer
32269-32281
0.003
1
6mer
30493-30518
0.003
4
6mer
26534-26559
0.002
2
6mer
27864-27877
0.002
1
6mer
8246-8260
0.001
0
6mer
26109-26129
0.001
1
6mer
11761-11777
0.001
Not Conserved
6mer
17995-18017
0.001
1
6mer
14580-14600
0.001
Not Conserved
6mer
15704-15725
0.001
Not Conserved
6mer
12245-12257
0.001
Not Conserved
6mer
8837-8856
0.001
0
6mer
6618-6633
0.001
1
6mer
11929-11942
0.001
Not Conserved
KCNMA1-AS1
hsa-miR-124-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429850
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
798-815
0.016
1
7mer
1744-1752
0.012
7
7mer
2771-2795
0.005
0
6mer
3447-3465
0.004
0
6mer
423-437
0.004
1
6mer
2699-2707
0.003
3
6mer
1194-1207
0.003
0
6mer
1762-1773
0.002
9
6mer
2534-2558
0.002
1
MGC27345
hsa-miR-124-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9981-9998
0.017
0
7mer
9852-9874
0.013
1
6mer
9391-9411
0.004
2
8mer
1756-1767
0.004
1
7mer
8643-8659
0.004
0
6mer
8948-8962
0.003
4
6mer
8389-8408
0.002
0
6mer
1561-1573
0.001
1
6mer
8612-8634
0.001
0
6mer
1552-1573
0.000
1
6mer
1556-1573
0.000
2
TTTY15
hsa-miR-124-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
76-92
0.019
0
6mer
683-706
0.018
0
6mer
709-728
0.012
0
LINC01210
hsa-miR-124-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478772
Biotype: lincRNA
Gene id: ENSG00000239513
Gene Name: LINC01210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-469
0.049
2
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