LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012599
hsa-miR-124-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026176
Biotype: transcript isomorph
Gene id: XLOC_012599
Gene Name: XLOC_012599
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1858-1878
0.053
Not Conserved
7mer
944-961
0.004
Not Conserved
6mer
1474-1500
0.002
Not Conserved
6mer
1210-1219
0.002
Not Conserved
XLOC_008225
hsa-miR-124-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016927
Biotype: transcript isomorph
Gene id: XLOC_008225
Gene Name: XLOC_008225
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-42
0.057
1
6mer
816-836
0.003
1
RP11-96K19.4
hsa-miR-124-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-92
0.048
1
6mer
1208-1227
0.008
1
6mer
730-746
0.003
0
XLOC_010639
hsa-miR-124-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021665
Biotype: transcript isomorph
Gene id: XLOC_010639
Gene Name: XLOC_010639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-145
0.059
1
AC096558.1
hsa-miR-124-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000550516
Biotype: antisense
Gene id: ENSG00000228655
Gene Name: AC096558.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-406
0.059
1
NEAT1
hsa-miR-124-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22186-22209
0.019
0
9mer
2922-2947
0.012
1
6mer
22560-22583
0.006
2
6mer
3771-3781
0.003
4
6mer
1629-1649
0.003
4
7mer
3247-3269
0.003
1
7mer
1769-1790
0.003
1
6mer
4200-4218
0.002
0
6mer
5228-5250
0.002
1
6mer
13887-13903
0.001
1
6mer
5981-5996
0.001
1
6mer
11557-11571
0.001
0
6mer
18973-18989
0.001
1
6mer
6526-6541
0.001
1
6mer
1685-1710
0.001
0
RP11-88I18.3
hsa-miR-124-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434656
Biotype: sense_intronic
Gene id: ENSG00000229019
Gene Name: RP11-88I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-71
0.059
1
MIR6818
hsa-miR-124-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28086-28109
0.018
1
7mer
23720-23737
0.006
1
8mer
24651-24671
0.005
1
7mer
2563-2578
0.005
3
6mer
39473-39492
0.003
6
6mer
25102-25118
0.002
5
6mer
6575-6596
0.002
1
6mer
48425-48447
0.002
0
6mer
6259-6278
0.002
2
6mer
33219-33237
0.002
2
6mer
16669-16692
0.002
2
6mer
29756-29775
0.002
1
6mer
15876-15889
0.001
1
6mer
310-326
0.001
0
6mer
20034-20050
0.001
1
6mer
12920-12941
0.001
1
6mer
36733-36752
0.001
Not Conserved
6mer
20833-20848
0.001
0
KMT2E-AS1
hsa-miR-124-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024586.1
Biotype: lincRNA
Gene id: NR_024586.1 (gene)
Gene Name: KMT2E-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
437-451
0.034
1
7mer
377-399
0.013
1
6mer
247-270
0.007
2
6mer
1977-2000
0.003
5
RP11-70F11.11
hsa-miR-124-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550636
Biotype: lincRNA
Gene id: ENSG00000258135
Gene Name: RP11-70F11.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-281
0.052
2
6mer
414-426
0.005
1
TTTY15
hsa-miR-124-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
115-137
0.017
0
6mer
246-262
0.016
0
6mer
1074-1097
0.008
0
7mer
4247-4265
0.007
Not Conserved
6mer
3379-3405
0.004
0
6mer
1100-1119
0.004
0
XLOC_009417
hsa-miR-124-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019617
Biotype: transcript isomorph
Gene id: XLOC_009417
Gene Name: XLOC_009417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-68
0.056
0
CTC-428G20.3
hsa-miR-124-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507241
Biotype: lincRNA
Gene id: ENSG00000248175
Gene Name: CTC-428G20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1915-1937
0.049
1
6mer
2038-2063
0.004
0
6mer
437-451
0.003
0
AC005537.2
hsa-miR-124-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-484
0.056
1
XLOC_005623
hsa-miR-124-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012093
Biotype: transcript isomorph
Gene id: XLOC_005623
Gene Name: XLOC_005623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-53
0.056
0
XLOC_006753
hsa-miR-124-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6731-6748
0.041
13
7mer
2799-2812
0.006
1
6mer
3323-3342
0.003
7
6mer
6262-6274
0.003
3
6mer
5268-5291
0.001
2
6mer
3854-3867
0.001
1
6mer
4382-4408
0.001
1
XLOC_008295
hsa-miR-124-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-170
0.017
0
6mer
279-295
0.016
0
6mer
1107-1130
0.008
0
7mer
4280-4298
0.007
Not Conserved
6mer
1133-1152
0.004
0
6mer
3412-3438
0.004
0
TTTY15
hsa-miR-124-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-170
0.017
0
6mer
279-295
0.016
0
6mer
1107-1130
0.008
0
7mer
4280-4298
0.007
Not Conserved
6mer
1133-1152
0.004
0
6mer
3412-3438
0.004
0
RP11-74E22.8
hsa-miR-124-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-47
0.056
10
RP11-326C3.12
hsa-miR-124-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534483
Biotype: lincRNA
Gene id: ENSG00000255328
Gene Name: RP11-326C3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-658
0.050
0
6mer
704-729
0.006
0
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