LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002073
hsa-miR-124-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004236
Biotype: transcript isomorph
Gene id: XLOC_002073
Gene Name: XLOC_002073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-371
0.066
1
6mer
435-450
0.003
1
RP3-323A16.1
hsa-miR-124-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53554-53576
0.008
1
7mer
51024-51048
0.005
0
7mer
43267-43283
0.005
1
6mer
37165-37185
0.005
7
7mer
50472-50491
0.004
0
8mer
50710-50719
0.004
0
7mer
51459-51470
0.004
1
7mer
49132-49146
0.004
1
7mer
25606-25626
0.004
1
6mer
13546-13562
0.003
4
6mer
1248-1270
0.003
1
6mer
26838-26861
0.002
1
7mer
11169-11195
0.002
0
6mer
31253-31272
0.002
0
6mer
28985-29012
0.002
1
6mer
20696-20711
0.001
3
6mer
52158-52172
0.001
0
6mer
29764-29783
0.001
1
6mer
22582-22606
0.001
1
6mer
21800-21824
0.001
0
6mer
40253-40269
0.001
1
6mer
14293-14317
0.001
0
6mer
33904-33930
0.001
0
6mer
44204-44226
0.001
1
6mer
1351-1366
0.001
0
6mer
22052-22070
0.001
Not Conserved
6mer
21888-21909
0.000
Not Conserved
RP3-468B3.2
hsa-miR-124-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451317
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2224-2247
0.059
8
8mer
1549-1567
0.005
1
7mer
2072-2093
0.004
1
RP11-15B24.5
hsa-miR-124-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585998
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-796
0.036
2
7mer
133-149
0.026
2
6mer
60-72
0.006
2
LOC284581
hsa-miR-124-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2006-2025
0.054
0
6mer
1744-1760
0.012
1
LINC01210
hsa-miR-124-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469216
Biotype: lincRNA
Gene id: ENSG00000239513
Gene Name: LINC01210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-480
0.058
2
6mer
135-156
0.006
1
6mer
202-225
0.003
0
LINC01210
hsa-miR-124-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471091
Biotype: lincRNA
Gene id: ENSG00000239513
Gene Name: LINC01210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-267
0.066
2
AP000469.2
hsa-miR-124-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416218
Biotype: lincRNA
Gene id: ENSG00000224832
Gene Name: AP000469.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-337
0.053
0
7mer
56-76
0.007
Not Conserved
6mer
1854-1880
0.006
1
RP11-436D23.1
hsa-miR-124-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607823
Biotype: lincRNA
Gene id: ENSG00000271860
Gene Name: RP11-436D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-64
0.066
1
XLOC_005397
hsa-miR-124-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011893
Biotype: transcript isomorph
Gene id: XLOC_005397
Gene Name: XLOC_005397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-176
0.065
1
RP11-368I7.6
hsa-miR-124-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000615131
Biotype: antisense
Gene id: ENSG00000275734
Gene Name: RP11-368I7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-471
0.065
1
RP11-756P10.4
hsa-miR-124-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505178
Biotype: lincRNA
Gene id: ENSG00000249269
Gene Name: RP11-756P10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-101
0.064
1
RP11-290F24.6
hsa-miR-124-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000600308
Biotype: lincRNA
Gene id: ENSG00000267940
Gene Name: RP11-290F24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-198
0.064
5
XLOC_011354
hsa-miR-124-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024008
Biotype: transcript isomorph
Gene id: XLOC_011354
Gene Name: XLOC_011354
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-242
0.063
2
RP11-677M14.7
hsa-miR-124-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499143
Biotype: antisense
Gene id: ENSG00000245498
Gene Name: RP11-677M14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2692-2712
0.056
1
7mer
909-922
0.006
0
XLOC_001715
hsa-miR-124-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003908
Biotype: transcript isomorph
Gene id: XLOC_001715
Gene Name: XLOC_001715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
980-998
0.062
1
XLOC_006207
hsa-miR-124-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013563
Biotype: transcript isomorph
Gene id: XLOC_006207
Gene Name: XLOC_006207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
955-974
0.062
1
FAM224A
hsa-miR-124-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-575
0.032
0
6mer
1675-1688
0.015
0
6mer
217-239
0.014
0
XLOC_009016
hsa-miR-124-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019181
Biotype: transcript isomorph
Gene id: XLOC_009016
Gene Name: XLOC_009016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-256
0.049
1
6mer
477-498
0.012
1
PCBP1-AS1
hsa-miR-124-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617142
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-132
0.056
1
6mer
202-215
0.005
1
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