LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-124-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_009043
hsa-miR-124-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-464
0.053
0
7mer
499-515
0.050
0
XXbac-B33L19.6
hsa-miR-124-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620909
Biotype: lincRNA
Gene id: ENSG00000277017
Gene Name: XXbac-B33L19.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-520
0.070
1
7mer
523-538
0.031
1
LINC00643
hsa-miR-124-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623219
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-736
0.100
10
CTD-3105H18.13
hsa-miR-124-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-54
0.092
0
XLOC_007089
hsa-miR-124-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1345-1359
0.075
1
6mer
80-104
0.004
Not Conserved
6mer
9624-9646
0.003
0
6mer
550-562
0.003
Not Conserved
6mer
3462-3477
0.002
0
6mer
8884-8906
0.001
Not Conserved
6mer
4708-4726
0.001
Not Conserved
6mer
7305-7318
0.001
Not Conserved
XLOC_013174
hsa-miR-124-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-665
0.035
0
7mer
903-922
0.025
0
6mer
38-60
0.015
0
6mer
1328-1344
0.013
0
CTC-471F3.6
hsa-miR-124-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593658
Biotype: lincRNA
Gene id: ENSG00000268166
Gene Name: CTC-471F3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-102
0.086
3
XLOC_010720
hsa-miR-124-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022114
Biotype: transcript isomorph
Gene id: XLOC_010720
Gene Name: XLOC_010720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-75
0.078
0
6mer
326-340
0.005
1
XLOC_002712
hsa-miR-124-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006100
Biotype: transcript isomorph
Gene id: XLOC_002712
Gene Name: XLOC_002712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-402
0.082
0
RP11-352B15.2
hsa-miR-124-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
696-718
0.042
0
7mer
993-1016
0.029
0
6mer
983-1005
0.010
0
LINC00839
hsa-miR-124-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2019-2038
0.064
0
6mer
1770-1791
0.006
0
6mer
1211-1230
0.006
1
6mer
1044-1063
0.002
0
6mer
963-987
0.001
Not Conserved
LINC00839
hsa-miR-124-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2020-2039
0.064
0
6mer
1771-1792
0.006
0
6mer
1212-1231
0.006
1
6mer
1045-1064
0.002
0
6mer
964-988
0.001
Not Conserved
RP11-458F8.4
hsa-miR-124-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3395-3411
0.027
1
7mer
3197-3216
0.011
1
6mer
520-545
0.006
1
6mer
3046-3070
0.006
1
6mer
2940-2954
0.006
1
6mer
2569-2594
0.005
1
6mer
2801-2816
0.003
1
6mer
2364-2388
0.003
1
6mer
2706-2722
0.003
1
8mer+mismatch
983-1007
0.002
0
6mer
2053-2069
0.002
0
6mer
819-837
0.002
0
6mer
1026-1041
0.001
0
6mer
2084-2102
0.001
0
XLOC_010133
hsa-miR-124-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-128
0.059
0
6mer
154-178
0.015
0
RP11-731J8.2
hsa-miR-124-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-48
0.035
7
7mer
3542-3555
0.014
5
7mer
6714-6736
0.012
3
6mer
485-498
0.008
5
6mer
537-555
0.003
3
6mer
3884-3900
0.003
5
RP11-7N14.1
hsa-miR-124-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544959
Biotype: antisense
Gene id: ENSG00000256403
Gene Name: RP11-7N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-475
0.073
5
KCNQ1OT1
hsa-miR-124-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3327-3348
0.006
1
7mer
23229-23247
0.006
1
7mer
90002-90026
0.005
3
7mer
22430-22457
0.003
0
7mer
81751-81771
0.003
1
7mer
9878-9889
0.003
0
7mer
46593-46616
0.003
1
6mer
68195-68207
0.003
3
7mer
84538-84559
0.003
1
6mer
47002-47016
0.002
4
6mer
70508-70530
0.002
2
6mer
49019-49023
0.002
1
6mer
55057-55071
0.002
0
6mer
74277-74289
0.002
2
6mer
73073-73092
0.002
1
6mer
13670-13695
0.002
1
6mer
62341-62357
0.002
1
6mer
89766-89774
0.002
0
6mer
42257-42271
0.001
1
6mer
61347-61361
0.001
1
6mer
28426-28446
0.001
0
6mer
57964-57978
0.001
1
6mer
85500-85526
0.001
1
6mer
37614-37628
0.001
0
6mer
63357-63376
0.001
1
6mer
46433-46451
0.001
1
6mer
55867-55881
0.001
1
7mer
85485-85503
0.001
0
6mer
46106-46130
0.001
1
6mer
45407-45427
0.001
1
6mer
75442-75467
0.001
0
6mer
54990-55006
0.001
1
6mer
61840-61853
0.001
0
6mer
84727-84742
0.001
Not Conserved
6mer
39653-39668
0.001
0
6mer
74230-74255
0.000
0
AC006548.28
hsa-miR-124-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27866-27881
0.010
1
7mer
23017-23035
0.007
1
7mer
21156-21170
0.004
2
7mer
2352-2375
0.004
1
7mer
8140-8165
0.003
1
7mer
13448-13461
0.003
1
6mer
1340-1360
0.002
0
6mer
72476-72496
0.002
Not Conserved
6mer
81203-81226
0.002
1
6mer
76962-76978
0.002
0
6mer
37541-37565
0.002
1
6mer
73755-73768
0.002
1
6mer
5028-5051
0.002
2
6mer
71635-71652
0.002
0
6mer
43859-43885
0.002
3
6mer
20397-20414
0.002
0
7mer
12492-12506
0.002
0
6mer
14792-14808
0.001
1
6mer
74590-74602
0.001
0
6mer
77171-77183
0.001
0
6mer
57447-57458
0.001
0
6mer
80957-80971
0.001
1
6mer
24302-24315
0.001
1
6mer
38459-38477
0.001
2
6mer
17367-17388
0.001
1
6mer
16865-16873
0.001
0
6mer
36146-36164
0.001
0
6mer
75653-75665
0.001
0
6mer
4181-4199
0.001
0
6mer
60189-60202
0.001
0
6mer
39868-39892
0.001
1
6mer
65207-65224
0.001
0
6mer
71540-71561
0.001
0
6mer
17102-17116
0.001
1
6mer
17184-17201
0.001
0
6mer
17266-17283
0.000
0
XLOC_004319
hsa-miR-124-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009907
Biotype: transcript isomorph
Gene id: XLOC_004319
Gene Name: XLOC_004319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-404
0.071
Not Conserved
LINC01210
hsa-miR-124-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465283
Biotype: lincRNA
Gene id: ENSG00000239513
Gene Name: LINC01210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-459
0.062
2
6mer
114-135
0.006
1
6mer
181-204
0.003
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept