LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010506
hsa-miR-124-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021915
Biotype: transcript isomorph
Gene id: XLOC_010506
Gene Name: XLOC_010506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-382
0.035
1
XLOC_010383
hsa-miR-124-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-366
0.035
0
XLOC_013010
hsa-miR-124-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
84-92
0.017
0
6mer
513-528
0.011
0
7mer
311-338
0.007
Not Conserved
RP11-80F22.4
hsa-miR-124-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567902
Biotype: lincRNA
Gene id: ENSG00000261445
Gene Name: RP11-80F22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-141
0.020
0
7mer
347-361
0.016
0
RP11-506B6.6
hsa-miR-124-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590804
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-472
0.021
2
7mer
379-393
0.015
1
RP11-15B24.5
hsa-miR-124-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590903
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.030
2
6mer
454-470
0.005
3
XLOC_011338
hsa-miR-124-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023491
Biotype: transcript isomorph
Gene id: XLOC_011338
Gene Name: XLOC_011338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-440
0.035
0
TSNAX-DISC1
hsa-miR-124-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028398.1
Biotype: sense
Gene id: NR_028398.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2384-2403
0.020
0
7mer
941-956
0.007
1
6mer
2789-2811
0.004
4
7mer
2456-2477
0.003
0
6mer
1564-1587
0.001
2
AC083843.1
hsa-miR-124-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000568248
Biotype: lincRNA
Gene id: ENSG00000259820
Gene Name: AC083843.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-188
0.018
1
7mer
1280-1293
0.007
1
6mer
5707-5730
0.005
2
7mer
4049-4070
0.003
1
6mer
2026-2045
0.002
1
RP11-727A23.10
hsa-miR-124-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530045
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2367-2388
0.010
0
7mer
1715-1738
0.009
0
7mer
1869-1889
0.008
0
6mer
447-473
0.006
4
6mer
1929-1954
0.002
0
6mer
1324-1351
0.001
Not Conserved
MAPKAPK5-AS1
hsa-miR-124-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609228
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-39
0.035
1
RP11-674P19.2
hsa-miR-124-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1772-1799
0.028
1
6mer
162-181
0.006
0
RP11-255H23.4
hsa-miR-124-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599944
Biotype: lincRNA
Gene id: ENSG00000267924
Gene Name: RP11-255H23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2231-2253
0.013
0
8mer
1830-1855
0.011
0
6mer
537-544
0.004
0
6mer
982-1008
0.003
0
6mer
1235-1250
0.003
0
MAPKAPK5-AS1
hsa-miR-124-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000442119
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-76
0.034
1
TXNDC12-AS1
hsa-miR-124-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428794
Biotype: antisense
Gene id: ENSG00000228369
Gene Name: TXNDC12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-340
0.018
2
7mer
117-143
0.016
1
LINC01297
hsa-miR-124-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621052
Biotype: lincRNA
Gene id: ENSG00000274827
Gene Name: LINC01297
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2081-2094
0.008
0
6mer
4101-4121
0.007
0
6mer
3712-3737
0.004
0
6mer
200-221
0.004
Not Conserved
6mer
1031-1057
0.004
0
6mer
3462-3482
0.003
0
6mer
1823-1834
0.002
0
6mer
3856-3876
0.002
Not Conserved
MAMDC2-AS1
hsa-miR-124-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448377
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-348
0.025
2
6mer
517-528
0.007
7
6mer
1720-1734
0.003
1
RP11-7F18.2
hsa-miR-124-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607397
Biotype: lincRNA
Gene id: ENSG00000271966
Gene Name: RP11-7F18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-488
0.018
1
7mer
766-793
0.016
0
RP4-568C11.4
hsa-miR-124-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-286
0.034
0
RP11-506B6.6
hsa-miR-124-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590584
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
546-565
0.019
2
7mer
472-486
0.015
1
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