LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
RP1-56K13.2
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581083
Biotype: antisense
Gene id: ENSG00000263466
Gene Name: RP1-56K13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-29
0.028
1
6mer
172-190
0.009
3
CTA-796E4.5
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15575-15593
0.007
1
7mer
29666-29688
0.006
0
6mer
740-759
0.003
4
7mer
8896-8918
0.003
0
7mer
15895-15909
0.002
1
6mer
26047-26065
0.002
1
6mer
26353-26377
0.002
5
6mer
1414-1433
0.002
1
6mer
26483-26496
0.002
2
6mer
19072-19088
0.001
1
6mer
18165-18181
0.001
1
6mer
13808-13819
0.001
1
6mer
29321-29335
0.001
1
6mer
8541-8556
0.001
2
6mer
6596-6611
0.001
0
RP11-410E4.1
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564407
Biotype: lincRNA
Gene id: ENSG00000259915
Gene Name: RP11-410E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2039-2052
0.023
1
7mer
1064-1081
0.014
1
RP11-251G23.5
hsa-miR-124-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609827
Biotype: antisense
Gene id: ENSG00000272604
Gene Name: RP11-251G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2132-2143
0.035
0
6mer
1124-1137
0.001
Not Conserved
XLOC_005905
hsa-miR-124-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012350
Biotype: transcript isomorph
Gene id: XLOC_005905
Gene Name: XLOC_005905
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-232
0.037
0
RP11-350F16.1
hsa-miR-124-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524012
Biotype: lincRNA
Gene id: ENSG00000253745
Gene Name: RP11-350F16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-598
0.020
1
6mer
531-554
0.010
1
6mer
497-517
0.007
1
RP11-142A22.4
hsa-miR-124-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610239
Biotype: lincRNA
Gene id: ENSG00000272727
Gene Name: RP11-142A22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1124-1144
0.032
0
6mer
231-257
0.004
1
RP11-79E3.3
hsa-miR-124-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512581
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-166
0.036
1
LINC00907
hsa-miR-124-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_046455.1
Biotype: lincRNA
Gene id: NR_046455.1 (gene)
Gene Name: LINC00907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-37
0.008
Not Conserved
7mer
315-336
0.007
1
7mer
2110-2133
0.007
1
6mer
3187-3204
0.005
2
6mer
3141-3155
0.004
0
6mer
2957-2968
0.003
1
6mer
1955-1974
0.002
0
RP11-702B10.2
hsa-miR-124-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609911
Biotype: lincRNA
Gene id: ENSG00000273415
Gene Name: RP11-702B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
873-897
0.032
1
6mer
744-758
0.003
1
RP11-989E6.10
hsa-miR-124-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1328-1344
0.009
0
6mer
392-407
0.009
0
7mer
1700-1726
0.003
0
6mer
999-1018
0.003
0
6mer
760-779
0.003
0
6mer
1945-1966
0.002
0
6mer
1268-1288
0.002
0
6mer
3113-3134
0.002
0
6mer
1599-1623
0.001
0
6mer
1901-1917
0.001
0
6mer
1678-1699
0.000
Not Conserved
TPTEP1
hsa-miR-124-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588548
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-33
0.021
Not Conserved
8mer
160-181
0.008
Not Conserved
6mer
2224-2237
0.005
Not Conserved
6mer
1026-1042
0.002
Not Conserved
6mer
1130-1149
0.001
Not Conserved
RP11-506B6.6
hsa-miR-124-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433684
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
887-906
0.021
2
7mer
813-827
0.015
1
AC009120.6
hsa-miR-124-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621548
Biotype: lincRNA
Gene id: ENSG00000259972
Gene Name: AC009120.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
961-984
0.033
0
6mer
1845-1868
0.003
0
PCBP1-AS1
hsa-miR-124-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425333
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-33
0.031
0
6mer
148-167
0.005
0
XLOC_012839
hsa-miR-124-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-119
0.021
0
7mer
2713-2730
0.006
1
6mer
6111-6127
0.005
2
6mer
1372-1385
0.002
1
6mer
1262-1280
0.002
1
LINC01000
hsa-miR-124-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9285-9307
0.018
1
7mer
9252-9263
0.008
1
6mer
9762-9775
0.004
1
6mer
4031-4057
0.002
1
6mer
5083-5092
0.001
1
6mer
6226-6246
0.001
0
6mer
6407-6424
0.001
0
6mer
1768-1793
0.001
Not Conserved
TPTEP1
hsa-miR-124-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-400
0.028
1
6mer
495-511
0.004
0
6mer
4730-4741
0.003
1
8mer+mismatch
2977-2995
0.001
Not Conserved
RP4-781K5.4
hsa-miR-124-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453568
Biotype: lincRNA
Gene id: ENSG00000228044
Gene Name: RP4-781K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
600-617
0.036
1
RP11-525K10.3
hsa-miR-124-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565050
Biotype: antisense
Gene id: ENSG00000259867
Gene Name: RP11-525K10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-30
0.029
2
6mer
1308-1330
0.006
3
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