LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
TMEM147-AS1
hsa-miR-124-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589137
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-50
0.036
1
6mer
622-644
0.002
1
CTA-292E10.9
hsa-miR-124-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-807
0.010
1
7mer
4408-4430
0.007
6
7mer
18106-18129
0.004
1
7mer
12549-12558
0.003
0
6mer
1841-1863
0.002
8
6mer
2595-2608
0.002
3
6mer
3869-3889
0.002
2
6mer
21236-21260
0.002
0
6mer
8940-8964
0.002
3
6mer
3907-3932
0.001
8
6mer
18282-18301
0.001
0
6mer
12064-12084
0.001
0
6mer
8972-8992
0.001
2
6mer
18365-18387
0.000
1
CTD-2572N17.1
hsa-miR-124-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527757
Biotype: lincRNA
Gene id: ENSG00000255109
Gene Name: CTD-2572N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-349
0.038
2
AC006946.16
hsa-miR-124-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608373
Biotype: lincRNA
Gene id: ENSG00000273203
Gene Name: AC006946.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-48
0.025
0
7mer
1827-1853
0.009
0
6mer
937-962
0.003
0
AC079586.1
hsa-miR-124-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2067-2079
0.036
1
6mer
1409-1420
0.002
0
XLOC_008025
hsa-miR-124-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017209
Biotype: transcript isomorph
Gene id: XLOC_008025
Gene Name: XLOC_008025
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-43
0.038
1
RP11-154H23.3
hsa-miR-124-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2352-2361
0.016
1
7mer
1439-1459
0.013
1
7mer
1588-1599
0.009
3
RP11-525K10.3
hsa-miR-124-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568776
Biotype: antisense
Gene id: ENSG00000259867
Gene Name: RP11-525K10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-226
0.026
2
6mer
3-26
0.006
1
6mer
1293-1315
0.005
3
SOS1-IT1
hsa-miR-124-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609942
Biotype: sense_intronic
Gene id: ENSG00000229692
Gene Name: SOS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-499
0.025
6
7mer
179-202
0.012
1
PLS3-AS1
hsa-miR-124-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000607680
Biotype: antisense
Gene id: ENSG00000271826
Gene Name: PLS3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1203-1227
0.031
1
6mer
537-552
0.003
0
6mer
923-944
0.003
1
CASC7
hsa-miR-124-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8958-8985
0.013
6
7mer
2023-2037
0.012
9
7mer
4468-4481
0.006
3
6mer
2733-2758
0.004
11
6mer
5436-5460
0.002
3
LINC01531
hsa-miR-124-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602468
Biotype: lincRNA
Gene id: ENSG00000205786
Gene Name: LINC01531
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-644
0.031
2
6mer
286-307
0.006
1
RP11-114H23.2
hsa-miR-124-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548702
Biotype: lincRNA
Gene id: ENSG00000258088
Gene Name: RP11-114H23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-293
0.035
0
6mer
455-474
0.002
0
LINC01237
hsa-miR-124-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430555
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
468-493
0.017
1
6mer
575-595
0.014
1
6mer
688-707
0.006
0
XLOC_007549
hsa-miR-124-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015557
Biotype: transcript isomorph
Gene id: XLOC_007549
Gene Name: XLOC_007549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-553
0.029
7
6mer
485-503
0.004
3
6mer
342-362
0.003
0
RP11-767N6.7
hsa-miR-124-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430643
Biotype: sense_intronic
Gene id: ENSG00000230896
Gene Name: RP11-767N6.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-581
0.037
6
XLOC_011745
hsa-miR-124-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024428
Biotype: transcript isomorph
Gene id: XLOC_011745
Gene Name: XLOC_011745
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-380
0.037
0
NUTM2B-AS1
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610681
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-30
0.033
2
6mer
3653-3672
0.004
1
RP11-854K16.3
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568414
Biotype: lincRNA
Gene id: ENSG00000260986
Gene Name: RP11-854K16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-108
0.037
0
TMEM44-AS1
hsa-miR-124-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447982
Biotype: antisense
Gene id: ENSG00000231770
Gene Name: TMEM44-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-253
0.037
1
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