LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
MIR8072
hsa-miR-106b-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543072
Biotype: lincRNA
Gene id: ENSG00000256092
Gene Name: MIR8072
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
165-181
0.095
5
HOTAIRM1
hsa-miR-106b-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593300
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-380
0.085
6
6mer
374-392
0.008
7
XLOC_007290
hsa-miR-106b-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1405-1432
0.091
3
XLOC_007556
hsa-miR-106b-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016692
Biotype: transcript isomorph
Gene id: XLOC_007556
Gene Name: XLOC_007556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4046-4060
0.076
1
6mer
4099-4117
0.006
3
6mer
3561-3584
0.004
1
8mer
1596-1616
0.003
0
6mer
2992-3012
0.002
1
AC006548.28
hsa-miR-106b-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28256-28283
0.006
0
8mer
2339-2360
0.006
0
8mer
59328-59342
0.006
1
8mer
63298-63310
0.005
1
8mer
2177-2197
0.005
1
8mer
71556-71577
0.005
Not Conserved
7mer
72926-72952
0.004
0
7mer
36096-36113
0.003
1
7mer
45010-45027
0.003
1
7mer
67657-67679
0.003
Not Conserved
8mer
81628-81648
0.003
1
8mer
66882-66899
0.003
Not Conserved
7mer
51927-51950
0.002
Not Conserved
6mer
48070-48097
0.002
Not Conserved
6mer
41050-41067
0.002
1
6mer
16543-16560
0.002
1
6mer
56911-56916
0.002
1
7mer
38120-38141
0.002
1
6mer
58305-58320
0.002
1
6mer
78692-78716
0.002
0
7mer
41577-41594
0.002
0
6mer
55725-55732
0.002
0
6mer
59469-59488
0.002
1
6mer
31062-31077
0.002
0
6mer
40396-40413
0.002
2
6mer
80180-80198
0.001
0
6mer
52732-52737
0.001
Not Conserved
6mer
24819-24827
0.001
0
6mer
23289-23299
0.001
1
6mer
12105-12122
0.001
1
6mer
72273-72295
0.001
Not Conserved
6mer
20630-20645
0.001
2
6mer
36841-36863
0.001
1
6mer
35981-36005
0.001
1
6mer
75137-75159
0.001
0
RP11-573D15.3
hsa-miR-106b-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
248-264
0.072
2
8mer
170-190
0.016
1
RP3-323A16.1
hsa-miR-106b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14822-14846
0.006
1
9mer
44778-44798
0.005
0
7mer
25696-25716
0.005
1
7mer
9822-9839
0.005
1
8mer
38890-38907
0.005
1
8mer
10836-10855
0.004
1
7mer
20381-20399
0.004
3
8mer
28242-28259
0.004
1
8mer
36602-36619
0.004
1
8mer
19372-19388
0.004
Not Conserved
6mer
53936-53959
0.003
1
8mer
3005-3024
0.003
1
7mer
40260-40277
0.003
1
7mer
42751-42763
0.003
1
6mer
42064-42068
0.003
3
6mer
18915-18936
0.002
1
6mer
33453-33475
0.002
0
6mer
10108-10119
0.002
0
6mer
28981-28997
0.002
1
8mer
47950-47970
0.002
0
6mer
27503-27518
0.002
1
6mer
2037-2044
0.002
1
6mer
32864-32879
0.002
0
6mer
39888-39904
0.002
1
6mer
20168-20182
0.001
Not Conserved
6mer
40192-40213
0.001
1
6mer
47830-47849
0.001
0
7mer
11846-11862
0.001
1
6mer
40444-40460
0.001
1
6mer
11780-11801
0.001
1
6mer
1291-1310
0.001
Not Conserved
7mer
17540-17561
0.001
Not Conserved
6mer
35236-35256
0.001
0
6mer
19355-19376
0.001
Not Conserved
6mer
20315-20329
0.001
1
AC011648.1
hsa-miR-106b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561310
Biotype: lincRNA
Gene id: ENSG00000259252
Gene Name: AC011648.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
500-521
0.088
1
RP13-991F5.2
hsa-miR-106b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-127
0.061
0
6mer
395-417
0.014
0
6mer
688-705
0.013
0
CTD-2524L6.3
hsa-miR-106b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563041
Biotype: antisense
Gene id: ENSG00000260037
Gene Name: CTD-2524L6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-571
0.087
7
TTTY15
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2927-2944
0.023
0
7mer
1092-1109
0.021
0
7mer
3141-3158
0.021
0
8mer
4000-4019
0.014
0
6mer
3952-3963
0.007
0
RP11-278I4.2
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-956
0.069
7
6mer
1209-1232
0.006
3
6mer
1119-1145
0.004
3
6mer
752-773
0.004
5
6mer
859-880
0.003
1
RP11-626G11.5
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568971
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-131
0.077
4
6mer
249-275
0.009
5
RP11-626G11.5
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567047
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-131
0.077
4
6mer
249-263
0.009
5
RP11-355O1.11
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561961
Biotype: sense_overlapping
Gene id: ENSG00000261094
Gene Name: RP11-355O1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1848-1862
0.069
1
8mer
109-129
0.008
0
6mer
1901-1919
0.006
3
6mer
1505-1525
0.003
1
PCAT19
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-47
0.060
1
6mer
982-1006
0.013
1
6mer
1085-1108
0.013
1
CTA-292E10.9
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-360
0.026
1
7mer
24406-24431
0.007
0
7mer
18585-18601
0.005
1
8mer
5241-5262
0.005
0
7mer
10077-10091
0.005
1
8mer
20055-20072
0.005
0
7mer
18660-18677
0.004
2
8mer
20716-20732
0.003
0
8mer
18913-18930
0.002
0
6mer
22093-22103
0.002
1
6mer
12355-12371
0.002
1
6mer
4847-4873
0.002
4
6mer
7235-7259
0.002
2
6mer
13584-13600
0.002
1
6mer
4267-4291
0.002
2
6mer
11425-11442
0.002
1
6mer
17559-17571
0.002
0
6mer
8941-8959
0.001
0
6mer
15304-15323
0.001
0
6mer
13159-13179
0.001
1
6mer
14845-14863
0.001
0
6mer
8987-9012
0.001
3
MIR6818
hsa-miR-106b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27872-27890
0.006
0
7mer
13042-13060
0.005
0
8mer
5130-5149
0.005
1
7mer
19534-19555
0.005
0
7mer
15070-15087
0.004
0
7mer
18421-18441
0.004
0
8mer
32675-32694
0.004
1
7mer
16604-16622
0.004
0
7mer
6055-6067
0.003
0
8mer
18048-18065
0.003
1
6mer
9551-9569
0.003
8
8mer
11895-11915
0.003
1
8mer
4948-4967
0.003
1
8mer
10538-10558
0.003
0
6mer
2529-2550
0.003
4
6mer
33713-33726
0.003
5
6mer
24396-24416
0.002
3
7mer
24277-24293
0.002
1
6mer
27261-27273
0.002
3
6mer
23994-24011
0.002
4
6mer
15991-16010
0.002
1
6mer
5772-5788
0.002
3
6mer
5893-5914
0.002
3
6mer
47494-47516
0.001
2
6mer
20094-20113
0.001
2
6mer
13706-13723
0.001
0
6mer
34118-34138
0.001
0
6mer
32428-32440
0.001
0
6mer
4492-4509
0.001
1
6mer
46477-46495
0.001
0
6mer
13653-13679
0.001
Not Conserved
XLOC_008295
hsa-miR-106b-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2960-2977
0.023
0
7mer
1125-1142
0.020
0
7mer
3174-3191
0.020
0
8mer
4033-4052
0.014
0
6mer
3985-3996
0.007
0
TTTY15
hsa-miR-106b-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2960-2977
0.023
0
7mer
1125-1142
0.020
0
7mer
3174-3191
0.020
0
8mer
4033-4052
0.014
0
6mer
3985-3996
0.007
0
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