LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-106a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-421L21.3
hsa-miR-106a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453011
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-791
0.056
3
LOC100128885
hsa-miR-106a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
191-216
0.019
1
9mer
3112-3136
0.013
0
7mer
4287-4308
0.012
0
6mer
393-415
0.006
0
6mer
3307-3329
0.005
0
6mer
2646-2663
0.001
Not Conserved
CTA-228A9.4
hsa-miR-106a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17029-17046
0.013
1
8mer
4456-4477
0.010
1
8mer
10030-10049
0.004
1
8mer
6107-6130
0.003
1
6mer
1205-1222
0.003
2
6mer
16338-16363
0.003
3
8mer
1607-1630
0.003
1
8mer
4080-4103
0.003
0
8mer
10711-10734
0.003
1
6mer
17931-17949
0.002
2
6mer
16538-16549
0.001
0
6mer
18131-18150
0.001
1
7mer
11163-11181
0.001
0
6mer
19465-19484
0.001
0
6mer
2214-2235
0.001
0
6mer
5573-5591
0.001
1
7mer
14148-14171
0.001
Not Conserved
ATP6V0E2-AS1
hsa-miR-106a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488315
Biotype: antisense
Gene id: ENSG00000204934
Gene Name: ATP6V0E2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-83
0.039
Not Conserved
8mer
656-672
0.011
Not Conserved
7mer
1973-1986
0.005
0
HOTAIRM1
hsa-miR-106a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
724-747
0.047
8
6mer
736-760
0.008
7
NPTN-IT1
hsa-miR-106a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_103844.1
Biotype: sense
Gene id: NR_103844.1 (gene)
Gene Name: NPTN-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-367
0.051
1
6mer
301-313
0.004
0
TTN-AS1
hsa-miR-106a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
847-860
0.026
8
7mer
493-500
0.024
6
6mer
774-797
0.005
2
LINC00836
hsa-miR-106a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108069.1
Biotype: lincRNA
Gene id: NR_108069.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1058-1074
0.048
0
6mer
1080-1097
0.006
0
GABPB1-AS1
hsa-miR-106a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14703-14722
0.007
1
6mer
16135-16154
0.006
2
8mer
4970-4993
0.005
1
7mer
2460-2475
0.004
Not Conserved
8mer
12592-12615
0.004
1
8mer
13803-13822
0.003
1
7mer
9537-9561
0.003
2
6mer
15491-15517
0.003
1
8mer
13494-13517
0.003
0
8mer
2009-2032
0.003
0
6mer
5512-5532
0.002
3
6mer
8532-8559
0.002
1
8mer
11192-11212
0.002
0
6mer
11067-11085
0.002
1
7mer
11108-11124
0.002
1
6mer
8142-8164
0.002
Not Conserved
6mer
11896-11916
0.001
1
6mer
1717-1744
0.001
0
6mer
12009-12032
0.001
1
NEAT1
hsa-miR-106a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19819-19841
0.008
1
7mer
18811-18835
0.005
0
6mer
833-853
0.004
1
7mer
3666-3686
0.003
0
7mer
10505-10532
0.003
0
6mer
9678-9696
0.003
2
7mer
16395-16421
0.003
1
6mer
18506-18528
0.003
1
6mer
14750-14769
0.003
2
6mer
9048-9075
0.002
1
8mer
16619-16642
0.002
0
6mer
11646-11667
0.002
0
8mer+mismatch
7927-7946
0.002
1
6mer
18952-18957
0.002
1
6mer
10035-10060
0.002
1
6mer
16527-16547
0.002
1
6mer
15338-15352
0.002
0
6mer
13250-13275
0.001
0
6mer
18654-18678
0.001
1
6mer
19054-19066
0.001
2
6mer
9136-9152
0.001
1
6mer
9070-9082
0.001
0
AC144831.1
hsa-miR-106a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2350-2374
0.021
1
8mer
373-394
0.017
1
7mer
2071-2097
0.013
1
6mer
2342-2354
0.003
Not Conserved
AC018359.1
hsa-miR-106a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424786
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-153
0.028
0
7mer
519-545
0.026
0
AP000479.1
hsa-miR-106a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532274
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1414-1438
0.038
1
6mer
211-220
0.005
0
6mer
1024-1048
0.004
1
6mer
799-817
0.004
1
6mer
1728-1746
0.003
0
XLOC_005501
hsa-miR-106a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1768-1791
0.052
1
6mer
339-356
0.002
Not Conserved
HOTAIRM1
hsa-miR-106a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434063
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
491-514
0.046
8
6mer
503-527
0.008
7
SNHG14
hsa-miR-106a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3722-3747
0.014
1
8mer
8569-8592
0.012
1
7mer
4770-4794
0.006
1
6mer
8491-8511
0.005
1
7mer
6395-6411
0.004
2
6mer
7859-7881
0.003
1
7mer
4408-4424
0.003
1
7mer
6135-6152
0.002
1
7mer
6035-6061
0.002
1
6mer
4212-4237
0.002
1
XLOC_007556
hsa-miR-106a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016692
Biotype: transcript isomorph
Gene id: XLOC_007556
Gene Name: XLOC_007556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4046-4059
0.051
1
8mer
1596-1615
0.003
0
RP11-909M7.3
hsa-miR-106a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-730
0.038
0
7mer
881-899
0.015
1
RP11-355O1.11
hsa-miR-106a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561961
Biotype: sense_overlapping
Gene id: ENSG00000261094
Gene Name: RP11-355O1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1848-1861
0.046
1
8mer
109-128
0.008
0
LINC01517
hsa-miR-106a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
276-293
0.028
0
7mer
95-121
0.026
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept