LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-214K3.23
hsa-miR-106a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602347
Biotype: sense_intronic
Gene id: ENSG00000270130
Gene Name: RP11-214K3.23
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-308
0.035
2
8mer
75-88
0.023
0
RP11-1086F11.1
hsa-miR-106a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417786
Biotype: sense_intronic
Gene id: ENSG00000225300
Gene Name: RP11-1086F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1679-1697
0.058
1
RP3-467K16.4
hsa-miR-106a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4221-4231
0.019
3
9mer
4637-4659
0.018
1
8mer
4017-4037
0.015
3
7mer
4522-4549
0.006
2
RP11-108P20.1
hsa-miR-106a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592021
Biotype: lincRNA
Gene id: ENSG00000267010
Gene Name: RP11-108P20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2127-2145
0.015
1
6mer
132-155
0.008
1
7mer
1751-1771
0.008
0
6mer
264-286
0.008
3
6mer
2176-2195
0.006
1
7mer
1389-1411
0.005
0
6mer
1649-1663
0.005
1
6mer
216-243
0.004
0
RP11-57A19.5
hsa-miR-106a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-121
0.058
0
RP4-646N3.1
hsa-miR-106a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432359
Biotype: lincRNA
Gene id: ENSG00000235806
Gene Name: RP4-646N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-152
0.058
6
RP5-1014D13.2
hsa-miR-106a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6187-6214
0.014
1
8mer
5027-5046
0.007
0
6mer
437-464
0.004
Not Conserved
7mer
8185-8207
0.004
1
8mer
10159-10178
0.003
0
8mer
7505-7523
0.003
0
8mer
11200-11219
0.003
0
8mer
6586-6612
0.003
0
8mer
7171-7191
0.003
0
8mer
3091-3110
0.002
0
6mer
9470-9497
0.002
Not Conserved
6mer
10751-10770
0.002
0
6mer
8003-8023
0.002
0
6mer
5838-5859
0.002
0
6mer
4521-4547
0.002
1
8mer
5893-5916
0.001
0
6mer
6883-6906
0.001
Not Conserved
6mer
9777-9800
0.001
0
6mer
9512-9531
0.001
0
6mer
6264-6283
0.000
0
RP11-348J24.2
hsa-miR-106a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2621-2640
0.037
1
6mer
2773-2794
0.005
0
6mer
2727-2746
0.004
1
7mer
1626-1648
0.004
1
6mer
2307-2329
0.003
1
6mer
1134-1154
0.002
1
6mer
1192-1215
0.002
3
ZNF561-AS1
hsa-miR-106a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
893-912
0.033
0
6mer
2325-2346
0.024
0
XLOC_008528
hsa-miR-106a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3217-3225
0.020
1
6mer
4042-4053
0.009
1
7mer
2241-2260
0.008
0
6mer
39-66
0.007
1
7mer
480-501
0.006
0
6mer
3632-3656
0.005
Not Conserved
6mer
2660-2672
0.003
0
MIR6080
hsa-miR-106a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578492
Biotype: processed_transcript
Gene id: ENSG00000215769
Gene Name: MIR6080
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
146-164
0.048
7
6mer
257-276
0.005
3
6mer
295-315
0.004
3
RP11-799D4.4
hsa-miR-106a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588697
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-285
0.057
1
BCYRN1
hsa-miR-106a-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-322
0.021
1
8mer
928-947
0.008
1
9mer
12732-12752
0.007
1
8mer
11237-11260
0.004
1
8mer
2688-2714
0.004
0
9mer
6252-6272
0.003
1
6mer
4564-4583
0.003
1
6mer
1105-1123
0.002
3
6mer
12082-12102
0.002
1
6mer
5722-5739
0.002
1
6mer
7916-7939
0.001
0
VCAN-AS1
hsa-miR-106a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513899
Biotype: antisense
Gene id: ENSG00000249835
Gene Name: VCAN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-340
0.056
7
RP11-887P2.5
hsa-miR-106a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-72
0.032
2
7mer
169-186
0.011
3
6mer
1264-1289
0.005
3
6mer
1447-1467
0.004
1
6mer
1342-1362
0.003
0
6mer
580-603
0.002
1
CTA-796E4.5
hsa-miR-106a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1371-1393
0.006
0
6mer
132-143
0.006
1
7mer
16018-16044
0.005
2
8mer
9297-9320
0.004
1
6mer
31169-31187
0.004
0
6mer
1985-2008
0.003
3
6mer
24119-24143
0.003
0
6mer
25373-25398
0.002
1
6mer
5887-5907
0.002
2
7mer
22036-22059
0.002
0
6mer
20502-20527
0.002
1
6mer
3282-3304
0.002
1
6mer
20969-20985
0.002
0
6mer
28635-28660
0.002
0
6mer
17711-17725
0.001
0
6mer
7544-7569
0.001
0
6mer
19761-19786
0.001
1
6mer
20634-20659
0.001
1
6mer
8650-8673
0.001
1
6mer
29354-29372
0.001
Not Conserved
6mer
8183-8201
0.001
Not Conserved
6mer
3481-3495
0.001
1
6mer
29428-29441
0.001
2
6mer
22049-22071
0.001
1
6mer
8792-8812
0.001
1
CTC-260E6.6
hsa-miR-106a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-595
0.046
1
6mer
1031-1049
0.010
0
LCMT1-AS2
hsa-miR-106a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1036-1055
0.029
1
6mer
616-633
0.013
1
6mer
2185-2201
0.007
1
6mer
4758-4780
0.005
0
6mer
2987-3009
0.002
0
XLOC_007035
hsa-miR-106a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-709
0.011
Not Conserved
8mer
6331-6347
0.007
Not Conserved
8mer
3871-3894
0.007
1
7mer
6062-6080
0.006
2
8mer
10200-10223
0.005
0
8mer
11004-11022
0.004
0
8mer
9367-9390
0.003
0
8mer
6957-6976
0.003
0
6mer
849-871
0.003
0
6mer
18357-18375
0.002
Not Conserved
6mer
2743-2769
0.002
0
6mer
14053-14076
0.001
0
HNF1A-AS1
hsa-miR-106a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537361
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-516
0.056
5
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