LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP3-412A9.17
hsa-miR-106a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1769-1788
0.010
1
8mer
394-417
0.007
0
8mer
13468-13484
0.007
1
8mer
16277-16296
0.006
Not Conserved
8mer
8688-8711
0.005
1
7mer
1416-1440
0.003
1
6mer
14041-14065
0.003
4
8mer
9784-9807
0.003
0
8mer
4752-4771
0.003
0
7mer
10050-10072
0.002
0
6mer
12832-12852
0.002
1
6mer
15759-15781
0.002
0
6mer
15018-15040
0.002
1
7mer
11952-11972
0.002
0
6mer
879-902
0.001
0
6mer
15278-15296
0.001
0
6mer
2540-2558
0.001
0
CTD-2626G11.2
hsa-miR-106a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-88
0.021
0
6mer
136-162
0.020
0
8mer
7732-7756
0.011
Not Conserved
7mer
7867-7883
0.005
Not Conserved
7mer
7196-7222
0.002
Not Conserved
AP000487.4
hsa-miR-106a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000324630
Biotype: antisense
Gene id: ENSG00000254495
Gene Name: AP000487.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12-20
0.038
1
6mer
287-306
0.010
1
6mer
267-290
0.008
1
6mer
201-224
0.004
1
HNF1A-AS1
hsa-miR-106a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619441
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-335
0.060
5
HCG11
hsa-miR-106a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411553
Biotype: lincRNA
Gene id: ENSG00000228223
Gene Name: HCG11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-712
0.014
1
7mer
1928-1947
0.012
1
6mer
422-444
0.011
1
6mer
100-126
0.009
0
6mer
990-1009
0.006
0
6mer
1611-1630
0.005
1
6mer
1159-1176
0.003
0
RP11-2H8.2
hsa-miR-106a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1155-1177
0.026
1
8mer
150-168
0.017
1
6mer
423-449
0.006
1
6mer
340-360
0.006
1
7mer
774-794
0.005
1
RP11-1000B6.7
hsa-miR-106a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-157
0.028
0
6mer
202-213
0.019
0
6mer
325-342
0.013
0
CTC-428G20.3
hsa-miR-106a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507241
Biotype: lincRNA
Gene id: ENSG00000248175
Gene Name: CTC-428G20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1959-1978
0.043
1
7mer
849-861
0.007
1
7mer
1735-1755
0.006
1
6mer
1419-1437
0.004
1
RP11-177F15.1
hsa-miR-106a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442726
Biotype: lincRNA
Gene id: ENSG00000231877
Gene Name: RP11-177F15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2310-2331
0.041
2
8mer
353-370
0.012
1
6mer
2527-2552
0.006
3
RP11-21I10.2
hsa-miR-106a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-173
0.053
0
6mer
283-297
0.007
0
XLOC_010706
hsa-miR-106a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
27-44
0.017
1
6mer
3771-3796
0.016
1
6mer
3915-3935
0.009
0
7mer
2947-2963
0.005
Not Conserved
6mer
982-1002
0.005
0
7mer
3311-3337
0.003
Not Conserved
6mer
1800-1820
0.003
0
AC008268.1
hsa-miR-106a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1051-1074
0.029
2
8mer
631-656
0.018
1
7mer
961-976
0.012
2
HAND2-AS1
hsa-miR-106a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2785-2810
0.021
7
8mer
4433-4453
0.020
8
6mer
3929-3956
0.004
6
6mer
2491-2514
0.004
7
6mer
243-263
0.003
1
6mer
4006-4029
0.003
6
7mer
2590-2610
0.002
4
6mer
2511-2530
0.001
6
6mer
2255-2276
0.001
0
LL22NC03-22D1.1
hsa-miR-106a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-124
0.011
2
7mer
7767-7780
0.004
1
6mer
1064-1087
0.004
4
8mer
3878-3897
0.003
1
6mer
17518-17539
0.003
7
6mer
13366-13385
0.003
5
6mer
22007-22016
0.003
0
6mer
18736-18754
0.003
2
7mer
8459-8474
0.003
Not Conserved
6mer
25962-25986
0.002
1
7mer
23962-23971
0.002
0
6mer
4574-4598
0.002
1
6mer
12788-12814
0.002
0
6mer
18523-18537
0.002
1
6mer
16169-16194
0.002
1
6mer
17233-17250
0.002
0
7mer
27146-27163
0.002
Not Conserved
6mer
17702-17722
0.001
1
6mer
2471-2497
0.001
0
6mer
6035-6060
0.001
1
6mer
23982-24003
0.001
0
XLOC_008538
hsa-miR-106a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1947-1970
0.014
0
6mer
475-487
0.012
1
6mer
1809-1829
0.010
1
6mer
1249-1271
0.009
1
6mer
1377-1404
0.008
1
6mer
1661-1684
0.005
0
RP11-544D21.2
hsa-miR-106a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561926
Biotype: lincRNA
Gene id: ENSG00000259776
Gene Name: RP11-544D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2418-2442
0.025
2
8mer
957-980
0.017
1
7mer
2463-2486
0.009
1
8mer
2031-2054
0.005
0
6mer
1208-1213
0.003
1
LOC100129917
hsa-miR-106a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-326
0.058
1
RP11-440L14.1
hsa-miR-106a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-326
0.058
1
CTC-327F10.5
hsa-miR-106a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512300
Biotype: antisense
Gene id: ENSG00000248362
Gene Name: CTC-327F10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
700-717
0.046
0
6mer
767-783
0.007
1
6mer
318-342
0.006
1
RP11-424G14.1
hsa-miR-106a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000566193
Biotype: lincRNA
Gene id: ENSG00000260197
Gene Name: RP11-424G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-529
0.032
0
7mer
173-197
0.013
0
6mer
771-798
0.005
0
6mer
494-516
0.005
0
6mer
1088-1114
0.004
0
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