LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
LINC00662
hsa-miR-106a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027301.1
Biotype: lincRNA
Gene id: NR_027301.1 (gene)
Gene Name: LINC00662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-142
0.021
0
6mer
185-210
0.019
0
6mer
480-504
0.012
0
6mer
1113-1136
0.012
0
RP11-159D12.2
hsa-miR-106a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3978-4002
0.044
0
7mer
3675-3693
0.009
1
6mer
3043-3059
0.003
0
6mer
2208-2219
0.002
3
6mer
2959-2969
0.002
1
6mer
1379-1404
0.001
1
6mer
2133-2156
0.001
1
RP11-440L14.1
hsa-miR-106a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503405
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-229
0.063
1
TTTY15
hsa-miR-106a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2924-2943
0.023
0
7mer
3944-3964
0.010
0
6mer
3141-3157
0.010
0
6mer
1088-1108
0.008
0
6mer
2451-2465
0.007
0
6mer
1265-1284
0.002
Not Conserved
9mer
4000-4020
0.001
Not Conserved
RP11-328C8.4
hsa-miR-106a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547824
Biotype: antisense
Gene id: ENSG00000257225
Gene Name: RP11-328C8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-349
0.050
4
8mer
771-793
0.012
3
FAM224A
hsa-miR-106a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1725-1742
0.051
0
6mer
570-588
0.011
0
MIR4534
hsa-miR-106a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47355-47378
0.008
0
7mer
9239-9255
0.004
1
8mer
21985-22008
0.004
0
6mer
54361-54376
0.003
0
8mer
27627-27646
0.003
1
8mer
21676-21699
0.003
1
8mer
6921-6944
0.003
1
6mer
19394-19415
0.003
2
8mer
13613-13636
0.003
0
8mer
39706-39729
0.003
0
8mer
40033-40056
0.003
1
6mer
3090-3111
0.003
8
8mer
45369-45395
0.003
0
8mer
2293-2312
0.002
0
8mer
2599-2618
0.002
0
6mer
4131-4149
0.002
2
6mer
26751-26773
0.002
1
6mer
10539-10557
0.002
2
6mer
20672-20695
0.002
5
6mer
28205-28221
0.001
1
6mer
29747-29772
0.001
3
6mer
47136-47155
0.001
Not Conserved
6mer
5764-5785
0.001
1
7mer
5265-5286
0.001
0
6mer
23640-23664
0.001
Not Conserved
RP11-60H5.1
hsa-miR-106a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567718
Biotype: lincRNA
Gene id: ENSG00000260840
Gene Name: RP11-60H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-51
0.031
1
8mer
614-634
0.011
0
7mer
2902-2923
0.009
2
6mer
446-467
0.006
2
6mer
366-389
0.004
1
XLOC_009222
hsa-miR-106a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4159-4178
0.024
0
6mer
5986-6013
0.020
0
6mer
232-253
0.013
0
6mer
2251-2272
0.005
0
XLOC_008087
hsa-miR-106a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-165
0.062
1
AC010745.2
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-714
0.057
1
6mer
460-482
0.004
0
XLOC_008295
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2957-2976
0.023
0
7mer
3977-3997
0.010
0
6mer
3174-3190
0.009
0
6mer
1121-1141
0.008
0
6mer
2484-2498
0.007
0
6mer
1298-1317
0.002
Not Conserved
9mer
4033-4053
0.001
Not Conserved
TTTY15
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2957-2976
0.023
0
7mer
3977-3997
0.010
0
6mer
3174-3190
0.009
0
6mer
1121-1141
0.008
0
6mer
2484-2498
0.007
0
6mer
1298-1317
0.002
Not Conserved
9mer
4033-4053
0.001
Not Conserved
AC073133.1
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436670
Biotype: lincRNA
Gene id: ENSG00000233878
Gene Name: AC073133.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-161
0.058
7
6mer
1972-1988
0.003
1
LOC100130452
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_034036.1
Biotype: antisense
Gene id: NR_034036.1 (gene)
Gene Name: LOC100130452
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-351
0.058
1
6mer
394-420
0.004
0
RP11-96K19.4
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
60-84
0.011
0
6mer
2117-2137
0.008
1
6mer
5918-5932
0.007
0
6mer
2566-2587
0.007
1
6mer
1424-1445
0.007
1
6mer
3456-3474
0.006
1
6mer
3668-3689
0.006
1
6mer
4767-4786
0.006
0
6mer
3028-3050
0.002
Not Conserved
RP11-81A1.6
hsa-miR-106a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-738
0.027
3
6mer
1875-1892
0.011
7
6mer
2154-2168
0.010
3
6mer
77-97
0.006
1
6mer
335-357
0.006
1
RP11-399O19.9
hsa-miR-106a-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1172-1197
0.046
1
7mer
1019-1046
0.010
0
6mer
645-659
0.004
1
LINC00839
hsa-miR-106a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1425-1445
0.033
1
6mer
2097-2122
0.018
1
6mer
1413-1438
0.010
1
LINC00839
hsa-miR-106a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1426-1446
0.033
1
6mer
2098-2123
0.018
1
6mer
1414-1439
0.010
1
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