LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
HAND2-AS1
hsa-miR-106a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
915-940
0.033
7
8mer
2563-2583
0.021
8
6mer
621-644
0.008
7
7mer
720-740
0.005
4
6mer
641-660
0.005
6
6mer
2059-2086
0.005
6
6mer
336-356
0.003
1
6mer
2136-2159
0.003
6
AC114776.3
hsa-miR-106a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-77
0.058
1
8mer
1061-1084
0.009
0
6mer
1304-1315
0.008
1
6mer
3795-3807
0.007
0
RP5-1024G6.8
hsa-miR-106a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602943
Biotype: lincRNA
Gene id: ENSG00000270172
Gene Name: RP5-1024G6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1219-1232
0.048
6
8mer
1115-1130
0.013
7
6mer
450-468
0.011
11
6mer
543-561
0.005
4
6mer
398-420
0.005
2
SIK3-IT1
hsa-miR-106a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-351
0.074
7
6mer
1219-1237
0.004
1
6mer
1018-1043
0.003
0
HAND2-AS1
hsa-miR-106a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2392-2417
0.049
7
6mer
2098-2121
0.010
7
7mer
2197-2217
0.009
4
6mer
2118-2137
0.008
6
6mer
242-262
0.003
1
6mer
1862-1883
0.002
0
XLOC_012997
hsa-miR-106a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
743-761
0.038
1
7mer
463-489
0.023
1
6mer
564-586
0.012
1
7mer
1718-1735
0.007
Not Conserved
RP11-356C4.3
hsa-miR-106a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562203
Biotype: lincRNA
Gene id: ENSG00000260507
Gene Name: RP11-356C4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-356
0.056
0
6mer
387-403
0.023
0
XLOC_000782
hsa-miR-106a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2281-2301
0.074
0
6mer
325-339
0.004
Not Conserved
RP11-466F5.10
hsa-miR-106a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608512
Biotype: lincRNA
Gene id: ENSG00000273365
Gene Name: RP11-466F5.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-37
0.077
1
HAND2-AS1
hsa-miR-106a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2389-2414
0.045
7
6mer
2095-2118
0.010
7
7mer
2194-2214
0.009
4
6mer
2115-2134
0.008
6
6mer
239-259
0.003
1
6mer
1859-1880
0.002
0
HAND2-AS1
hsa-miR-106a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508534
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
651-676
0.039
7
8mer
2299-2319
0.021
8
7mer
456-476
0.007
4
6mer
1795-1822
0.005
6
6mer
336-356
0.003
1
6mer
1872-1895
0.003
6
AC007308.6
hsa-miR-106a-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1539-1562
0.033
2
8mer
1830-1846
0.020
0
9mer
2113-2132
0.018
1
8mer
522-541
0.005
Not Conserved
XLOC_006976
hsa-miR-106a-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1566-1589
0.024
1
6mer
287-312
0.017
1
8mer
2150-2173
0.012
0
7mer
1747-1765
0.011
1
6mer
11-26
0.008
0
6mer
1733-1750
0.004
1
RP11-531F16.4
hsa-miR-106a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608000
Biotype: antisense
Gene id: ENSG00000273261
Gene Name: RP11-531F16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-123
0.060
3
7mer
394-415
0.011
2
6mer
84-106
0.005
0
XLOC_013424
hsa-miR-106a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027818
Biotype: transcript isomorph
Gene id: XLOC_013424
Gene Name: XLOC_013424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-27
0.075
0
XLOC_006964
hsa-miR-106a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-270
0.075
1
XLOC_007078
hsa-miR-106a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
552-577
0.041
1
6mer
34-60
0.016
1
6mer
323-336
0.009
0
6mer
772-787
0.008
0
CTA-941F9.10
hsa-miR-106a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22446-22454
0.019
2
8mer
6466-6478
0.007
1
7mer
7715-7728
0.006
0
7mer
1563-1579
0.004
0
7mer
1859-1881
0.004
0
7mer
896-915
0.004
0
7mer
13586-13606
0.004
0
7mer
10372-10392
0.004
1
7mer
9144-9158
0.004
1
6mer
6130-6139
0.003
2
6mer
18929-18950
0.003
1
6mer
10771-10790
0.003
3
6mer
3250-3276
0.002
0
6mer
4917-4938
0.002
0
6mer
1041-1063
0.002
0
6mer
16377-16392
0.001
0
6mer
19114-19127
0.001
1
6mer
5365-5386
0.001
1
6mer
7740-7756
0.001
1
RP1-184J9.2
hsa-miR-106a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427154
Biotype: antisense
Gene id: ENSG00000240553
Gene Name: RP1-184J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-496
0.074
10
RP11-573D15.3
hsa-miR-106a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-263
0.057
3
8mer
170-189
0.016
1
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