LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
LOC100190986
hsa-miR-106a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-272
0.057
0
6mer
2144-2169
0.018
0
6mer
1973-1999
0.011
0
6mer
1142-1169
0.009
0
LINC00293
hsa-miR-106a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1351-1377
0.064
1
8mer
528-555
0.031
0
CTD-2015H6.3
hsa-miR-106a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-492
0.059
2
7mer
91-110
0.017
1
8mer
838-857
0.013
1
6mer
340-360
0.005
1
XLOC_010384
hsa-miR-106a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021786
Biotype: transcript isomorph
Gene id: XLOC_010384
Gene Name: XLOC_010384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-625
0.037
5
8mer
513-533
0.036
1
7mer
15-32
0.012
4
6mer
1027-1048
0.005
3
6mer
436-452
0.004
1
HAND2-AS1
hsa-miR-106a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
703-728
0.038
7
8mer
2351-2371
0.021
8
6mer
409-432
0.008
7
6mer
429-448
0.007
6
7mer
508-528
0.006
4
6mer
1847-1874
0.005
6
6mer
336-356
0.003
1
6mer
1924-1947
0.003
6
CTD-2313F11.1
hsa-miR-106a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615566
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
703-729
0.063
2
9mer
520-539
0.027
1
MIR6818
hsa-miR-106a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27873-27895
0.006
0
7mer
19534-19559
0.005
0
8mer
5131-5154
0.005
1
8mer
32675-32694
0.004
1
7mer
15990-16012
0.004
1
8mer
18049-18067
0.003
1
6mer
9551-9570
0.003
8
6mer
25223-25239
0.003
6
8mer
11896-11915
0.003
1
8mer
4949-4972
0.003
1
8mer
10539-10558
0.003
0
6mer
5772-5788
0.003
3
6mer
2529-2533
0.003
4
6mer
2936-2955
0.002
5
6mer
24396-24417
0.002
3
6mer
45355-45372
0.002
0
7mer
34117-34138
0.002
0
6mer
15071-15087
0.002
1
6mer
33713-33733
0.002
5
6mer
18422-18447
0.002
1
6mer
3979-3997
0.002
1
6mer
23994-24013
0.002
5
6mer
6056-6067
0.002
0
6mer
9223-9238
0.002
1
6mer
30587-30610
0.002
1
6mer
16605-16620
0.002
0
6mer
20561-20575
0.002
1
6mer
13654-13679
0.002
Not Conserved
6mer
33870-33890
0.002
1
6mer
8572-8598
0.002
1
6mer
46478-46495
0.001
2
6mer
47494-47518
0.001
2
6mer
32428-32440
0.001
0
6mer
45798-45821
0.001
1
6mer
20094-20114
0.001
2
6mer
45683-45702
0.001
1
6mer
4493-4516
0.001
1
6mer
25142-25167
0.001
3
XLOC_001668
hsa-miR-106a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5159-5178
0.049
1
8mer
5637-5655
0.020
0
6mer
1919-1942
0.008
1
6mer
2383-2407
0.006
1
6mer
4282-4306
0.006
1
LOC102467081
hsa-miR-106a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104662.1
Biotype: sense
Gene id: NR_104662.1 (gene)
Gene Name: LOC102467081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
503-529
0.057
2
9mer
320-339
0.031
1
HAND2-AS1
hsa-miR-106a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
780-805
0.036
7
8mer
2428-2448
0.021
8
6mer
486-509
0.008
7
6mer
506-525
0.006
6
7mer
585-605
0.006
4
6mer
1924-1951
0.005
6
6mer
336-356
0.003
1
6mer
2001-2024
0.003
6
XLOC_004823
hsa-miR-106a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
762-788
0.061
2
9mer
579-598
0.026
1
LINC00293
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1388
0.056
1
8mer
539-566
0.031
0
CTA-221G9.11
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
849-872
0.073
0
6mer
155-174
0.013
0
LOC101929319
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110248.1
Biotype: antisense
Gene id: NR_110248.1 (gene)
Gene Name: LOC101929319
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
523-541
0.038
1
9mer
371-388
0.037
1
6mer
253-273
0.005
2
6mer
1439-1447
0.004
1
6mer
726-752
0.002
0
RP13-991F5.2
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-127
0.061
0
6mer
396-421
0.013
0
6mer
689-712
0.012
0
XLOC_000199
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1979-2002
0.067
1
6mer
957-976
0.016
1
6mer
969-993
0.002
0
XLOC_011677
hsa-miR-106a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024285
Biotype: transcript isomorph
Gene id: XLOC_011677
Gene Name: XLOC_011677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4576-4601
0.018
1
8mer
4987-5005
0.018
1
7mer
179-197
0.012
3
8mer
321-336
0.010
1
8mer
208-225
0.009
0
8mer
4011-4034
0.005
1
8mer
1886-1909
0.004
1
6mer
4292-4308
0.002
Not Conserved
6mer
1603-1607
0.002
1
6mer
4356-4383
0.002
0
6mer
3201-3218
0.002
0
RP11-809F4.3
hsa-miR-106a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-424
0.071
1
6mer
380-407
0.014
1
PVRL3-AS1
hsa-miR-106a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-623
0.083
6
RP3-323A16.1
hsa-miR-106a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38888-38906
0.005
1
8mer
10831-10854
0.004
1
8mer
28235-28258
0.004
1
8mer
42744-42764
0.004
1
8mer
36600-36618
0.004
1
8mer
19372-19388
0.004
Not Conserved
7mer
18913-18937
0.004
1
8mer
44778-44797
0.004
0
6mer
20384-20398
0.003
3
6mer
53936-53958
0.003
1
8mer
3006-3023
0.003
1
7mer
40257-40277
0.003
1
6mer
14829-14845
0.003
2
7mer
2035-2045
0.003
1
7mer
39886-39905
0.003
1
6mer
31723-31746
0.002
1
6mer
25697-25715
0.002
1
6mer
39658-39672
0.002
1
7mer
40438-40461
0.002
1
7mer
19350-19377
0.002
Not Conserved
6mer
10104-10118
0.002
0
6mer
9820-9838
0.002
1
6mer
12744-12765
0.002
1
8mer
47950-47969
0.002
0
6mer
32855-32879
0.002
0
6mer
26474-26488
0.001
1
6mer
47826-47848
0.001
1
6mer
40191-40212
0.001
1
6mer
20161-20182
0.001
Not Conserved
6mer
11782-11800
0.001
1
7mer
11849-11862
0.001
1
6mer
1289-1309
0.001
Not Conserved
7mer
17537-17561
0.001
Not Conserved
6mer
35236-35255
0.001
0
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