LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
MALAT1
hsa-miR-1-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000618227
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-75
0.053
3
LINC00703
hsa-miR-1-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454152
Biotype: lincRNA
Gene id: ENSG00000224382
Gene Name: LINC00703
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-40
0.052
4
6mer
1207-1222
0.001
2
XLOC_010949
hsa-miR-1-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022645
Biotype: transcript isomorph
Gene id: XLOC_010949
Gene Name: XLOC_010949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-62
0.053
1
RP11-324O2.3
hsa-miR-1-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000594870
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-378
0.053
2
XXbac-BPG248L24.13
hsa-miR-1-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000539514
Biotype: lincRNA
Gene id: ENSG00000256166
Gene Name: XXbac-BPG248L24.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-484
0.053
1
AC003973.4
hsa-miR-1-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-66
0.053
0
RP5-1159O4.1
hsa-miR-1-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609497
Biotype: lincRNA
Gene id: ENSG00000272894
Gene Name: RP5-1159O4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-79
0.038
2
7mer
1149-1164
0.014
3
LINC01500
hsa-miR-1-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556026
Biotype: lincRNA
Gene id: ENSG00000258583
Gene Name: LINC01500
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-317
0.053
5
AC091729.8
hsa-miR-1-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415656
Biotype: antisense
Gene id: ENSG00000226291
Gene Name: AC091729.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-297
0.053
0
HAND2-AS1
hsa-miR-1-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504740
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-378
0.053
6
RP11-344E13.3
hsa-miR-1-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579168
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-387
0.040
0
6mer
419-441
0.012
0
RP11-118F19.1
hsa-miR-1-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602862
Biotype: lincRNA
Gene id: ENSG00000270124
Gene Name: RP11-118F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-210
0.025
0
7mer
6-26
0.018
1
8mer+mismatch
457-476
0.009
1
PROX1-AS1
hsa-miR-1-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608328
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
500-522
0.052
3
RP11-54G14.1
hsa-miR-1-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613153
Biotype: lincRNA
Gene id: ENSG00000274918
Gene Name: RP11-54G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-279
0.052
1
RP11-255C15.3
hsa-miR-1-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000569932
Biotype: lincRNA
Gene id: ENSG00000260743
Gene Name: RP11-255C15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
367-392
0.052
Not Conserved
XLOC_004323
hsa-miR-1-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5318-5342
0.032
4
8mer
5137-5161
0.016
1
6mer
4597-4623
0.003
2
6mer
2491-2503
0.002
1
PROX1-AS1
hsa-miR-1-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608399
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-356
0.052
3
RP11-579D7.4
hsa-miR-1-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549864
Biotype: lincRNA
Gene id: ENSG00000257660
Gene Name: RP11-579D7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-103
0.046
8
6mer
28-32
0.006
3
XLOC_012151
hsa-miR-1-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025338
Biotype: transcript isomorph
Gene id: XLOC_012151
Gene Name: XLOC_012151
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-198
0.042
1
6mer
429-445
0.005
1
6mer
192-208
0.004
0
MCF2L-AS1
hsa-miR-1-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_034002.1
Biotype: antisense
Gene id: NR_034002.1 (gene)
Gene Name: MCF2L-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-307
0.007
1
7mer
261-278
0.006
0
7mer
321-338
0.006
0
7mer
470-485
0.006
1
7mer
381-398
0.005
0
7mer
350-365
0.005
0
7mer
441-458
0.005
0
7mer
501-517
0.004
0
6mer
611-615
0.003
0
6mer
917-943
0.003
0
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