LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-445O3.3
hsa-miR-1-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2697-2711
0.016
0
7mer
1978-1998
0.011
0
6mer
2625-2644
0.010
0
6mer
2057-2080
0.008
0
6mer
2356-2370
0.007
0
6mer
955-974
0.007
0
6mer
2511-2537
0.006
0
XLOC_006344
hsa-miR-1-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013682
Biotype: transcript isomorph
Gene id: XLOC_006344
Gene Name: XLOC_006344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-562
0.055
4
6mer
362-380
0.009
2
RP11-96G10.1
hsa-miR-1-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522274
Biotype: lincRNA
Gene id: ENSG00000254173
Gene Name: RP11-96G10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
146-164
0.064
0
XLOC_008528
hsa-miR-1-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3984-4011
0.032
0
8mer
963-985
0.018
1
7mer
2942-2961
0.010
1
6mer
2291-2311
0.002
0
RP3-512B11.3
hsa-miR-1-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000561592
Biotype: antisense
Gene id: ENSG00000261189
Gene Name: RP3-512B11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-245
0.059
7
6mer
664-688
0.003
1
XLOC_008895
hsa-miR-1-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018569
Biotype: transcript isomorph
Gene id: XLOC_008895
Gene Name: XLOC_008895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1310
0.048
6
7mer
1273-1282
0.009
5
6mer
1030-1052
0.005
6
LINC00663
hsa-miR-1-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1461-1483
0.032
1
7mer
1040-1055
0.013
1
6mer
528-549
0.006
1
6mer
259-283
0.006
0
6mer
221-245
0.005
0
RP11-181B18.1
hsa-miR-1-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414132
Biotype: antisense
Gene id: ENSG00000237919
Gene Name: RP11-181B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-75
0.061
0
LOC283070
hsa-miR-1-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-760
0.055
9
6mer
2208-2223
0.006
4
CTC-268N12.2
hsa-miR-1-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000619606
Biotype: antisense
Gene id: ENSG00000278638
Gene Name: CTC-268N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-82
0.061
4
SNHG14
hsa-miR-1-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7625-7641
0.022
2
7mer
84-110
0.021
3
8mer
2044-2067
0.008
0
6mer
2516-2535
0.003
2
6mer
2758-2781
0.002
1
6mer
4463-4475
0.002
1
6mer
3070-3088
0.002
0
XLOC_013142
hsa-miR-1-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027619
Biotype: transcript isomorph
Gene id: XLOC_013142
Gene Name: XLOC_013142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-291
0.057
3
6mer
336-344
0.003
1
XLOC_009001
hsa-miR-1-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018650
Biotype: transcript isomorph
Gene id: XLOC_009001
Gene Name: XLOC_009001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-264
0.013
0
7mer
31-50
0.012
0
7mer
67-94
0.011
0
7mer
269-288
0.010
0
7mer
203-220
0.005
Not Conserved
7mer
131-143
0.005
Not Conserved
7mer
99-111
0.005
Not Conserved
RP11-47L3.1
hsa-miR-1-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591886
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-428
0.044
0
6mer
382-404
0.016
0
PCAT14
hsa-miR-1-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_109832.1
Biotype: lincRNA
Gene id: NR_109832.1 (gene)
Gene Name: PCAT14
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-184
0.060
0
CTB-193M12.1
hsa-miR-1-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000549756
Biotype: antisense
Gene id: ENSG00000257769
Gene Name: CTB-193M12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-40
0.059
7
HAND2-AS1
hsa-miR-1-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512929
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-249
0.059
6
XLOC_006283
hsa-miR-1-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014228
Biotype: transcript isomorph
Gene id: XLOC_006283
Gene Name: XLOC_006283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-190
0.052
1
6mer
176-194
0.007
1
RP11-770G2.2
hsa-miR-1-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534505
Biotype: lincRNA
Gene id: ENSG00000255557
Gene Name: RP11-770G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-146
0.058
1
RP3-323A16.1
hsa-miR-1-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46102-46114
0.005
0
7mer
33185-33203
0.005
0
7mer
52265-52285
0.004
2
7mer
33790-33810
0.004
0
7mer
10258-10277
0.004
1
7mer
46903-46923
0.003
0
7mer
11645-11670
0.003
0
6mer
17580-17584
0.003
5
7mer
46230-46252
0.002
1
6mer
8764-8776
0.002
0
6mer
30033-30041
0.002
1
7mer
46914-46930
0.002
1
6mer
7421-7436
0.002
0
6mer
11068-11094
0.001
0
6mer
30146-30169
0.001
1
6mer
51812-51836
0.001
1
6mer
22470-22474
0.001
0
6mer
30631-30652
0.001
0
6mer
49997-50008
0.001
0
6mer
36663-36675
0.001
1
6mer
17966-17987
0.001
Not Conserved
6mer
46652-46671
0.001
0
6mer
9456-9477
0.001
0
6mer
18102-18126
0.001
1
6mer
30254-30275
0.001
0
6mer
15889-15907
0.001
1
6mer
14058-14079
0.001
0
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