LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-545I5.3
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606388
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1177-1196
0.059
1
8mer
105-125
0.019
1
6mer
3712-3737
0.005
2
6mer
487-514
0.003
1
6mer
2167-2178
0.002
1
RP11-545I5.3
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
745-764
0.081
1
6mer
3280-3305
0.005
2
6mer
1735-1746
0.002
1
AC010096.1
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1175-1193
0.088
6
RP4-555D20.2
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4514-4530
0.023
3
8mer
166-191
0.021
2
8mer
336-353
0.016
0
8mer
185-200
0.013
0
7mer
4120-4141
0.006
1
6mer
237-249
0.005
1
6mer
2552-2566
0.002
2
LINC00924
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554837
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-535
0.087
11
RP11-96D1.10
hsa-miR-1-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571975
Biotype: sense_overlapping
Gene id: ENSG00000263276
Gene Name: RP11-96D1.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2409-2425
0.050
11
7mer
2386-2391
0.025
11
7mer
1271-1287
0.010
1
6mer
1890-1895
0.003
3
XLOC_012981
hsa-miR-1-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2499-2517
0.034
0
8mer
576-599
0.031
0
7mer
1308-1325
0.008
0
7mer
632-651
0.007
0
6mer
754-774
0.004
0
6mer
309-322
0.002
Not Conserved
XLOC_006035
hsa-miR-1-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013404
Biotype: transcript isomorph
Gene id: XLOC_006035
Gene Name: XLOC_006035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-181
0.068
3
8mer
752-778
0.011
0
6mer
188-213
0.006
2
CAHM
hsa-miR-1-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037593.1
Biotype: lincRNA
Gene id: NR_037593.1 (gene)
Gene Name: CAHM
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-49
0.085
2
RP11-818C3.1
hsa-miR-1-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508799
Biotype: lincRNA
Gene id: ENSG00000250024
Gene Name: RP11-818C3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-23
0.065
3
8mer
496-514
0.012
1
7mer
614-637
0.007
1
RP11-451L19.1
hsa-miR-1-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579769
Biotype: lincRNA
Gene id: ENSG00000265644
Gene Name: RP11-451L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-222
0.060
1
9mer
548-555
0.024
0
RP11-421F16.3
hsa-miR-1-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500632
Biotype: antisense
Gene id: ENSG00000247903
Gene Name: RP11-421F16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-160
0.069
3
8mer
451-469
0.013
Not Conserved
6mer
1268-1286
0.002
2
MALAT1
hsa-miR-1-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000610851
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-394
0.051
3
8mer
167-173
0.032
1
CAHM
hsa-miR-1-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604200
Biotype: lincRNA
Gene id: ENSG00000270419
Gene Name: CAHM
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-49
0.083
2
C14orf23
hsa-miR-1-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000399387
Biotype: lincRNA
Gene id: ENSG00000186960
Gene Name: C14orf23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-52
0.055
9
7mer
118-142
0.018
6
7mer
948-975
0.009
4
XLOC_013072
hsa-miR-1-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027541
Biotype: transcript isomorph
Gene id: XLOC_013072
Gene Name: XLOC_013072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-322
0.082
0
CTA-29F11.1
hsa-miR-1-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564152
Biotype: antisense
Gene id: ENSG00000260708
Gene Name: CTA-29F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-31
0.075
1
6mer
106-127
0.006
0
RP11-202H2.1
hsa-miR-1-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550014
Biotype: lincRNA
Gene id: ENSG00000258185
Gene Name: RP11-202H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-279
0.069
7
6mer
384-395
0.012
8
RP11-1007O24.3
hsa-miR-1-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565181
Biotype: lincRNA
Gene id: ENSG00000261423
Gene Name: RP11-1007O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2138-2160
0.074
8
6mer
110-135
0.007
1
RP11-434D9.1
hsa-miR-1-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513234
Biotype: lincRNA
Gene id: ENSG00000249364
Gene Name: RP11-434D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-504
0.068
8
7mer
490-509
0.012
6
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